Assay Details
Target Gene Details
Entrez Gene ID: | 10297 |
Gene Name: | APC2, WNT signaling pathway regulator |
Gene Aliases: |
APCL |
Location: |
Chr.19:1446268-1473244 on Build GRCh38 |
Assay Gene Location: | Within Exon 5 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
APC2 | NM_005883.2 | 3 | 403 | NP_005874.1 |
XM_005259475.2 | 3 | 287 | XP_005259532.1 | |
XM_006722607.2 | 3 | 287 | XP_006722670.1 | |
XM_006722608.3 | 3 | 548 | XP_006722671.2 | |
XM_006722609.3 | 3 | 357 | XP_006722672.1 | |
XM_006722610.3 | 3 | 547 | XP_006722673.2 | |
AB012162.1 | 2 | 1908 | BAA34611.1 | |
AF110334.1 | 3 | 258 | AAD28183.1 | |
AF128222.1 | 2 | 399 | AAF01784.1 | |
AJ012652.1 | 2 | 399 | CAB61207.1 | |
AL078616.1 | 3 | 264 | ||
BC032573.1 | 3 | 403 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv32942 | Chr.19:1320268 - 1999205 on Build GRCh38 | Gain+Loss | BTBD2 SCAMP4 GAMT PLK5 MBD3 LOC100288123 CSNK1G2 ONECUT3 APC2 TCF3 ADAMTSL5 ATP8B3 KLF16 DAZAP1 CSNK1G2-AS1 NDUFS7 MIR1909 RPS15 C19orf25 ADAT3 UQCR11 ABHD17A MEX3D REEP6 PCSK4 MUM1 REXO1 |
nsv578279 | Chr.19:1413575 - 1530061 on Build GRCh38 | Gain | RPS15 PLK5 ADAMTSL5 REEP6 PCSK4 DAZAP1 C19orf25 APC2 |
nsv833705 | Chr.19:1380125 - 1544934 on Build GRCh38 | Loss | RPS15 GAMT PLK5 ADAMTSL5 REEP6 PCSK4 DAZAP1 C19orf25 NDUFS7 APC2 |
esv2758743 | Chr.19:951641 - 1544934 on Build GRCh38 | Gain+Loss | GAMT ATP5D PLK5 APC2 GPX4 STK11 ADAMTSL5 DAZAP1 NDUFS7 MIDN ARID3A RPS15 RNU6-2 CIRBP GRIN3B TMEM259 C19orf25 C19orf24 CNN2 CBARP ABCA7 CIRBP-AS1 REEP6 POLR2E LOC102725180 WDR18 PCSK4 LOC105372235 SBNO2 EFNA2 MUM1 ARHGAP45 |
nsv953942 | Chr.19:1371602 - 2057401 on Build GRCh38 | Deletion | BTBD2 SCAMP4 GAMT PLK5 MBD3 LOC100288123 CSNK1G2 ONECUT3 APC2 TCF3 ADAMTSL5 ATP8B3 KLF16 DAZAP1 CSNK1G2-AS1 NDUFS7 MIR1909 RPS15 MKNK2 C19orf25 ADAT3 UQCR11 ABHD17A MEX3D REEP6 PCSK4 MUM1 REXO1 |
nsv470105 | Chr.19:1444420 - 1526614 on Build GRCh38 | Gain | PLK5 ADAMTSL5 REEP6 PCSK4 C19orf25 APC2 |
More Information
Additional Information:
For this assay, SNP(s) [rs78476902] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |