Assay Details
Target Gene Details
Entrez Gene ID: | 283232 |
Gene Name: | transmembrane protein 80 |
Gene Aliases: |
- |
Location: |
Chr.11:695386-705028 on Build GRCh38 |
Assay Gene Location: | Within Exon 5 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TMEM80 | NM_001042463.2 | 5 | 1079 | NP_001035928.2 |
NM_001276253.1 | NP_001263182.1 | |||
NM_001276274.1 | NP_001263203.1 | |||
NM_174940.3 | 5 | 1055 | NP_777600.3 | |
XM_006718206.3 | XP_006718269.3 | |||
XM_017017600.1 | XP_016873089.1 | |||
AI739035.1 | ||||
AK124309.1 | ||||
AK302585.1 | ||||
BC008671.1 | 5 | 1003 | ||
BM874316.1 | ||||
CB044312.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv522733 | Chr.11:702250 - 752059 on Build GRCh38 | Loss | EPS8L2 TMEM80 TALDO1 |
nsv469923 | Chr.11:378188 - 1302334 on Build GRCh38 | Loss | PHRF1 MUC5B PNPLA2 TOLLIP HRAS SIGIRR CD151 MIR210 CHID1 PTDSS2 EPS8L2 TSPAN4 LOC143666 SNORA52 LOC101059906 MUC5AC PIDD1 DRD4 CDHR5 MIR210HG AP2A2 TMEM80 MUC2 CEND1 DEAF1 RNH1 POLR2L SLC25A22 SCT LOC171391 LMNTD2 RPLP2 RASSF7 LRRC56 TALDO1 CRACR2B PANO1 PDDC1 B4GALNT4 MIR6744 PKP3 MUC6 IRF7 ANO9 LOC101927503 |
nsv832043 | Chr.11:631027 - 758602 on Build GRCh38 | Loss | EPS8L2 TMEM80 TALDO1 DEAF1 DRD4 |
esv2759794 | Chr.11:409846 - 1336162 on Build GRCh38 | Loss | PHRF1 MUC5B PNPLA2 TOLLIP HRAS SIGIRR CD151 MIR210 CHID1 PTDSS2 EPS8L2 TSPAN4 LOC143666 SNORA52 LOC101059906 MUC5AC PIDD1 DRD4 CDHR5 MIR210HG AP2A2 TMEM80 MUC2 CEND1 DEAF1 RNH1 POLR2L SLC25A22 SCT LOC171391 LMNTD2 TOLLIP-AS1 RPLP2 RASSF7 LRRC56 TALDO1 CRACR2B PANO1 PDDC1 MIR6744 MUC6 IRF7 ANO9 LOC101927503 |
nsv552869 | Chr.11:702097 - 727446 on Build GRCh38 | Loss | EPS8L2 TMEM80 |
dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion | PHRF1 PNPLA2 HRAS SIGIRR CD151 MIR210 CHID1 PTDSS2 EPS8L2 TSPAN4 LOC143666 SNORA52 LOC101059906 PIDD1 DRD4 CDHR5 MIR210HG AP2A2 TMEM80 CEND1 DEAF1 RNH1 POLR2L SLC25A22 SCT LOC171391 LMNTD2 RPLP2 RASSF7 LRRC56 TALDO1 CRACR2B PANO1 PDDC1 B4GALNT4 PKP3 IRF7 ANO9 |
nsv1159791 | Chr.11:461793 - 909492 on Build GRCh38 | Deletion | PHRF1 PNPLA2 HRAS CD151 MIR210 CHID1 PTDSS2 EPS8L2 TSPAN4 LOC143666 SNORA52 LOC101059906 PIDD1 DRD4 CDHR5 MIR210HG TMEM80 CEND1 DEAF1 RNH1 POLR2L SLC25A22 SCT LOC171391 LMNTD2 RPLP2 RASSF7 LRRC56 TALDO1 CRACR2B PANO1 PDDC1 IRF7 |
More Information
Additional Information:
For this assay, SNP(s) [rs71469814] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |