Assay Details
Target Gene Details
Entrez Gene ID: | 126133 |
Gene Name: | aldehyde dehydrogenase 16 family member A1 |
Gene Aliases: |
- |
Location: |
Chr.19:49453216-49471050 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 4 - Exon 5 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ALDH16A1 | NM_001145396.1 | NP_001138868.1 | ||
NM_153329.3 | NP_699160.2 | |||
XM_011526441.1 | XP_011524743.1 | |||
XM_011526442.1 | XP_011524744.1 | |||
AK074136.1 | BAB84962.1 | |||
AK297101.1 | ||||
AK298587.1 | ||||
AK301246.1 | ||||
BC014895.2 | AAH14895.2 | |||
DA629821.1 | ||||
DC364604.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv2518 | Chr.19:49452273 - 49465137 on Build GRCh38 | Insertion | ALDH16A1 PIH1D1 |
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | CGB7 SLC17A7 IRF3 CD37 SNAR-A9 RPL18 PLA2G4C-AS1 PIH1D1 FLT3LG C19orf73 CGB3 SNAR-C4 GRIN2D FTL KCNA7 CCDC155 SIGLEC11 CABP5 IZUMO1 ATF5 SNAR-A13 TMEM143 EMP3 AP2A1 SNORD34 LOC100287477 MIR150 ZNF473 CCDC114 KDELR1 CGB1 SEC1P DKKL1 BAX SNAR-A3 MIR4750 PTOV1 SLC6A16 PNKP PLA2G4C SNORD33 CARD8 NUCB1 SNAR-C5 RUVBL2 PTH2 SNAR-A10 SNAR-G2 SNAR-B1 SNAR-A12 NUCB1-AS1 C19orf68 SNORD32A SNAR-A1 LOC101059948 FUT1 SNAR-A14 SNRNP70 SNAR-C2 SNAR-G1 SNORD35B NTN5 MIR6800 TEAD2 PRMT1 DHDH MIR4749 RCN3 LIN7B MED25 LOC105447645 CPT1C HSD17B14 RRAS LOC105372430 SCAF1 CYTH2 SNAR-A11 PTOV1-AS2 MIR5088 SNAR-C1 FUT2 BCAT2 CGB2 TBC1D17 IL4I1 VRK3 NOSIP GRWD1 PLEKHA4 KCNJ14 CA11 SNAR-A8 ADM5 CARD8-AS1 SNAR-B2 SNAR-A5 SNAR-A2 NTF4 RPL13A NUP62 AKT1S1 LHB BCL2L12 PPP1R15A LOC101928295 ALDH16A1 FAM83E PRR12 SNAR-A4 MIR4751 BSPH1 ELSPBP1 LIG1 RPS11 SYNGR4 MIR6799 SPACA4 MAMSTR MIR4324 FCGRT MIR6798 CGB8 SNORD35A PPFIA3 SNAR-C3 FUZ TSKS SNAR-A7 FLJ26850 CGB5 RASIP1 SIGLEC16 SPHK2 DBP PRRG2 SULT2B1 GYS1 HRC GFY SNAR-D SNAR-A6 TRPM4 TULP2 PTOV1-AS1 ZNF114 LMTK3 FGF21 |
nsv833862 | Chr.19:49448789 - 49570676 on Build GRCh38 | Loss | RPS11 SNORD34 MIR150 RPL13A PIH1D1 FLT3LG FCGRT SNORD32A ALDH16A1 RCN3 NOSIP SNORD35A SNORD35B SNORD33 |
nsv953599 | Chr.19:49386444 - 49506743 on Build GRCh38 | Deletion | RPS11 SLC17A7 SNORD34 MIR150 PTH2 RPL13A PIH1D1 FLT3LG SNORD32A GFY CCDC155 LOC101928295 ALDH16A1 SNORD35A SNORD35B SNORD33 |
More Information
Additional Information:
For this assay, SNP(s) [rs200529298] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |