Assay Details
Target Gene Details
Entrez Gene ID: | 83855 |
Gene Name: | Kruppel like factor 16 |
Gene Aliases: |
BTEB4, DRRF, NSLP2 |
Location: |
Chr.19:1852399-1863565 on Build GRCh38 |
Assay Gene Location: | Within Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
KLF16 | NM_031918.3 | 2 | 1036 | NP_114124.1 |
AF327440.1 | AAK15698.1 | |||
AK025941.1 | ||||
CV809534.1 | 2 | 570 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv3893156 | Chr.19:1766738 - 2115791 on Build GRCh38 | Loss | LOC100288123 SCAMP4 ABHD17A BTBD2 MIR1909 CSNK1G2-AS1 ADAT3 ONECUT3 AP3D1 KLF16 MKNK2 IZUMO4 REXO1 MOB3A CSNK1G2 ATP8B3 |
esv2669985 | Chr.19:1852046 - 1864993 on Build GRCh38 | Deletion | KLF16 |
esv32942 | Chr.19:1320268 - 1999205 on Build GRCh38 | Gain+Loss | LOC100288123 ABHD17A CSNK1G2-AS1 ADAT3 MBD3 REEP6 APC2 KLF16 UQCR11 ADAMTSL5 REXO1 CSNK1G2 RPS15 ATP8B3 MEX3D NDUFS7 SCAMP4 BTBD2 MIR1909 C19orf25 GAMT ONECUT3 TCF3 DAZAP1 PCSK4 PLK5 MUM1 |
nsv470107 | Chr.19:1782799 - 2100347 on Build GRCh38 | Loss | LOC100288123 SCAMP4 ABHD17A BTBD2 MIR1909 CSNK1G2-AS1 ADAT3 KLF16 MKNK2 IZUMO4 REXO1 MOB3A CSNK1G2 ATP8B3 |
nsv1160560 | Chr.19:1791100 - 1916393 on Build GRCh38 | Deletion | LOC100288123 SCAMP4 ABHD17A MIR1909 REXO1 ADAT3 ATP8B3 KLF16 |
nsv578338 | Chr.19:1847699 - 1869095 on Build GRCh38 | Loss | REXO1 KLF16 |
nsv578337 | Chr.19:1808864 - 1904613 on Build GRCh38 | Gain | LOC100288123 ABHD17A MIR1909 REXO1 ATP8B3 KLF16 |
nsv953942 | Chr.19:1371602 - 2057401 on Build GRCh38 | Deletion | LOC100288123 ABHD17A CSNK1G2-AS1 ADAT3 MBD3 REEP6 APC2 KLF16 UQCR11 MKNK2 ADAMTSL5 REXO1 CSNK1G2 RPS15 ATP8B3 MEX3D NDUFS7 SCAMP4 BTBD2 MIR1909 C19orf25 GAMT ONECUT3 TCF3 DAZAP1 PCSK4 PLK5 MUM1 |
More Information
Additional Information:
For this assay, SNP(s) [rs149080927] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |