Assay Details
Target Gene Details
Entrez Gene ID: | 84231 |
Gene Name: | TNF receptor associated factor 7 |
Gene Aliases: |
RFWD1, RNF119 |
Location: |
Chr.16:2155752-2178129 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 13 - Exon 14 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRAF7 | NM_032271.2 | NP_115647.2 | ||
XM_005255627.4 | XP_005255684.1 | |||
XM_011522700.1 | XP_011521002.1 | |||
AK090624.1 | ||||
AL136921.1 | CAB66855.1 | |||
AY569455.1 | AAS68363.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | C16orf91 PDIA2 ATP6V0C BAIAP3 HBA1 RPL3L NUBP2 CCNF METTL26 TSR3 UNKL NARFL LOC106660606 FAM234A LOC105371184 TELO2 WDR24 MIR6768 MCRIP2 HAGH TPSD1 RAB11FIP3 HBA2 LUC7L MPG ABCA17P RPUSD1 MIR940 METRN HS3ST6 RAB40C SNORA10 MLST8 UBE2I HBM MEIOB NME3 ARHGDIG MRPS34 LOC101929280 HBZ CACNA1H WASIR2 IGFALS HBQ1 SNORA78 WFIKKN1 WDR90 PKD1 MIR6767 AMDHD2 MIR1225 PRSS27 LOC105371047 MIR662 MIR3180-5 CCDC154 RGS11 SLC9A3R2 MSRB1 POLR3K ECI1 MIR4516 SNORA64 DECR2 NTN3 RPL23AP5 TPSG1 CLCN7 TMEM204 LOC107987233 HAGHL SYNGR3 AXIN1 CAPN15 TBC1D24 JMJD8 LOC107984876 MIR3176 LOC652276 PRR35 LMF1-AS1 FLJ42627 STUB1 MIR6511B1 PTX4 SNRNP25 NTHL1 PRR25 TPSAB1 MAPK8IP3 LOC729652 SOX8 NDUFB10 C1QTNF8 PIGQ TMEM8A NPW GNG13 RPS2 FAHD1 MIR3677 IFT140 SSTR5-AS1 SSTR5 LMF1 TBL3 CASKIN1 TSC2 ZNF598 NME4 RNPS1 E4F1 DNASE1L2 LOC105371045 RHOT2 FAM173A LOC105371049 LINC00235 FBXL16 SPSB3 CEMP1 KCTD5 LOC105371038 TRAF7 CRAMP1 PGP ABCA3 RAB26 DDX11L10 SNHG9 MSLN MRPL28 SNORD60 MIR4717 GNPTG RHBDF1 PRSS29P MIR5587 MIR3178 MIR3177 LOC100134368 TPSB2 PDPK1 RNF151 HN1L LOC100287175 SNHG19 EME2 C16orf59 LOC105371046 BRICD5 CHTF18 CCDC78 LINC00254 NOXO1 ERVK13-1 NPRL3 MIR6859-4 GFER RHBDL1 NHLRC4 |
nsv471072 | Chr.16:1971892 - 2317508 on Build GRCh38 | Loss | NTHL1 TRAF7 PGP ABCA3 RAB26 PKD1 MIR1225 SNORD60 LOC106660606 MIR4717 NPW MIR3180-5 MIR3677 SLC9A3R2 ECI1 TBL3 MIR4516 SNHG19 CASKIN1 BRICD5 TSC2 ZNF598 RNPS1 SYNGR3 E4F1 NOXO1 DNASE1L2 MIR940 MLST8 GFER LOC105371049 MIR6511B1 |
dgv4861n54 | Chr.16:2083900 - 2246850 on Build GRCh38 | Loss | MIR4516 SNHG19 CASKIN1 TRAF7 BRICD5 PGP TSC2 RAB26 E4F1 DNASE1L2 PKD1 MIR1225 MLST8 SNORD60 LOC105371049 MIR3180-5 ECI1 MIR6511B1 |
dgv4863n54 | Chr.16:2141733 - 2274302 on Build GRCh38 | Loss | SNHG19 CASKIN1 TRAF7 BRICD5 PGP RAB26 RNPS1 E4F1 DNASE1L2 MIR940 MLST8 SNORD60 LOC106660606 MIR3677 ECI1 |
nsv457349 | Chr.16:2055054 - 2200730 on Build GRCh38 | Loss | MIR4516 SNORD60 SNHG19 CASKIN1 TRAF7 TSC2 LOC105371049 MIR3180-5 RAB26 PKD1 MIR1225 MIR6511B1 |
nsv457351 | Chr.16:2156590 - 2274302 on Build GRCh38 | Loss | MLST8 LOC106660606 CASKIN1 TRAF7 BRICD5 PGP MIR3677 RNPS1 E4F1 DNASE1L2 MIR940 ECI1 |
nsv1052260 | Chr.16:2074546 - 2629655 on Build GRCh38 | Gain | CEMP1 TRAF7 PGP ABCA3 ATP6V0C RAB26 LOC729652 PKD1 CCNF MIR6767 AMDHD2 MIR1225 SNORD60 LOC106660606 MIR4717 MIR6768 MIR3180-5 MIR3178 MIR3677 PDPK1 ECI1 MIR4516 ABCA17P NTN3 SNHG19 C16orf59 CASKIN1 BRICD5 TSC2 RNPS1 E4F1 DNASE1L2 MIR940 MLST8 TBC1D24 LOC652276 LOC105371049 MIR6511B1 |
nsv952902 | Chr.16:2143400 - 2339999 on Build GRCh38 | Deletion | SNHG19 CASKIN1 TRAF7 BRICD5 PGP ABCA3 RAB26 RNPS1 E4F1 DNASE1L2 MIR940 MLST8 SNORD60 LOC106660606 MIR4717 MIR3677 ECI1 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |