Assay Details
Target Gene Details
Entrez Gene ID: | 23359 |
Gene Name: | family with sequence similarity 189 member A1 |
Gene Aliases: |
TMEM228 |
Location: |
Chr.15:29120252-29570723 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
FAM189A1 | NM_015307.1 | NP_056122.1 | ||
XM_011521407.2 | XP_011519709.1 | |||
DA188047.1 |
Target Gene Details
Entrez Gene ID: | 56160 |
Gene Name: | NSE3 homolog, SMC5-SMC6 complex component |
Gene Aliases: |
HCA4, MAGEG1, MAGEL3, NDNL2, NSE3 |
Location: |
Chr.15:29268149-29269816 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
NSMCE3 | NM_138704.3 | 1 | 766 | NP_619649.1 |
AF490510.1 | 1 | 774 | AAM08357.1 | |
AK056957.1 | 1 | 759 | BAB71325.1 | |
AK074138.1 | 1 | 404 | BAB84964.1 | |
BC041166.1 | 1 | 722 | AAH41166.2 | |
BC053999.1 | 1 | 738 | AAH53999.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1040778 | Chr.15:28689598 - 30515727 on Build GRCh38 | Loss | GOLGA8R GOLGA8M LOC105370746 GOLGA8J ULK4P3 GOLGA6L7P APBA2 LOC100289656 GOLGA8T FAM189A1 LOC101060569 WHAMMP2 LOC100130111 LOC107984752 CHRFAM7A PDCD6IPP2 NSMCE3 DKFZP434L187 LOC105370751 TJP1 |
nsv515660 | Chr.15:29250908 - 29272431 on Build GRCh38 | Gain | NSMCE3 FAM189A1 |
nsv527255 | Chr.15:28754022 - 30074044 on Build GRCh38 | Gain | LOC100130111 LOC107984752 PDCD6IPP2 NSMCE3 GOLGA6L7P APBA2 LOC100289656 FAM189A1 WHAMMP2 TJP1 |
esv2761859 | Chr.15:29266382 - 29312594 on Build GRCh38 | Loss | NSMCE3 FAM189A1 |
esv2751526 | Chr.15:28724519 - 30687025 on Build GRCh38 | Loss | LOC105370746 GOLGA8J LOC100996413 ULK4P2 GOLGA6L7P LOC100289656 GOLGA8T FAM189A1 ARHGAP11B LOC101060569 LOC100130111 CHRFAM7A PDCD6IPP2 NSMCE3 LOC105370751 GOLGA8R GOLGA8H ULK4P3 LOC101927579 LOC100288637 APBA2 WHAMMP2 LOC107984752 DKFZP434L187 TJP1 |
nsv1039798 | Chr.15:28724126 - 30158154 on Build GRCh38 | Gain | GOLGA8J ULK4P3 GOLGA6L7P APBA2 LOC100289656 GOLGA8T FAM189A1 WHAMMP2 LOC100130111 LOC107984752 PDCD6IPP2 NSMCE3 TJP1 |
nsv568675 | Chr.15:29035149 - 29916451 on Build GRCh38 | Gain | LOC100130111 NSMCE3 APBA2 FAM189A1 TJP1 |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |