Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 1 - Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
XM_017026666.1 | XP_016882155.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | OSCAR VSTM1 TFPT TARM1 NDUFA3 PRPF31 |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | MIR935 VSTM1 CACNG8 TARM1 CACNG6 |
nsv2542 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion | OSCAR VSTM1 TARM1 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | MIR935 VSTM1 CACNG8 CACNG6 CACNG7 |
esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain | VSTM1 |
dgv663e199 | Chr.19:54051591 - 54059132 on Build GRCh38 | Deletion | VSTM1 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR519A1 TSEN34 RPS9 MIR518D MIR523 MIR371A ZNF331 DPRX LOC105372457 MIR515-1 LILRA5 MIR526B TMC4 VSTM1 LILRB2 MIR519B MIR516A1 ZNF677 FAM90A27P MIR520C MIR518C MBOAT7 MIR518E MIR520E VN1R4 PRKCG MIR521-2 MIR524 CNOT3 MYADM MIR520H MIR518A1 MIR520F ZNF818P MIR4752 MIR373 LILRA6 MIR518A2 MIR517A MIR519A2 MIR516B1 MIR517B MIR518B BIRC8 MIR935 LOC284379 TFPT ZNF525 MIR516B2 MIR518F NDUFA3 MIR515-2 LILRB5 MIR527 MIR525 OSCAR MIR371B MIR520A MIR520D CACNG8 MIR498 LILRB3 MIR522 MIR519D MIR519E CACNG6 MIR516A2 ZNF665 MIR1323 MIR517C MIR1283-2 NLRP12 MIR520B ZNF761 MIR526A1 VN1R2 ZNF765 MIR521-1 MIR520G ZNF813 ZNF845 MIR512-1 MIR526A2 MIR372 LENG1 TARM1 MIR1283-1 MIR512-2 CACNG7 PRPF31 MIR519C TPM3P9 |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | OSCAR MIR935 VSTM1 CACNG8 TFPT TARM1 CACNG6 NDUFA3 PRPF31 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |