Assay Details
Target Gene Details
Entrez Gene ID: | 441054 |
Gene Name: | chromosome 4 open reading frame 47 |
Gene Aliases: |
- |
Location: |
Chr.4:185405227-185449828 on Build GRCh38 |
Assay Gene Location: | Within Intron 11 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
C4orf47 | NM_001114357.1 | NP_001107829.1 | ||
XM_005263019.3 | XP_005263076.1 | |||
XM_011531989.2 | XP_011530291.1 | |||
XM_017008236.1 | XP_016863725.1 | |||
XM_017008237.1 | XP_016863726.1 | |||
XM_017008238.1 | XP_016863727.1 | |||
XM_017008239.1 | XP_016863728.1 | |||
XM_017008240.1 | XP_016863729.1 | |||
XM_017008241.1 | XP_016863730.1 | |||
BC150574.1 |
Target Gene Details
Entrez Gene ID: | 256309 |
Gene Name: | coiled-coil domain containing 110 |
Gene Aliases: |
CT52, KM-HN-1, KMHN1 |
Location: |
Chr.4:185445182-185471759 on Build GRCh38 |
Assay Gene Location: | Within Exon 12 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CCDC110 | NM_001145411.1 | 6 | 2483 | NP_001138883.1 |
NM_152775.3 | 7 | 2594 | NP_689988.1 | |
XM_006714172.2 | XP_006714235.1 | |||
XM_017007988.1 | 6 | 2531 | XP_016863477.1 | |
AB080722.1 | 7 | 2560 | BAC81776.1 | |
AI949455.1 | 1 | 306 | ||
AL833337.1 | 7 | 2539 | ||
BC028419.1 | 7 | 2559 | AAH28419.1 | |
BC038515.1 | 6 | 2423 | AAH38515.1 | |
BX641119.1 | 7 | 2565 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1033523 | Chr.4:185394656 - 185473803 on Build GRCh38 | Gain | LRP2BP C4orf47 UFSP2 ANKRD37 CCDC110 LOC105377590 |
nsv4638 | Chr.4:185430219 - 185464782 on Build GRCh38 | Insertion | C4orf47 CCDC110 |
esv3603492 | Chr.4:185370615 - 185448567 on Build GRCh38 | Gain | LRP2BP C4orf47 UFSP2 ANKRD37 CCDC110 |
nsv517035 | Chr.4:185445161 - 185600889 on Build GRCh38 | Gain+Loss | C4orf47 CCDC110 SORBS2 LOC105377590 PDLIM3 |
nsv527026 | Chr.4:185404275 - 185632326 on Build GRCh38 | Gain | C4orf47 UFSP2 CCDC110 SORBS2 LOC105377590 PDLIM3 |
esv2759309 | Chr.4:185391971 - 185553542 on Build GRCh38 | Loss | LRP2BP C4orf47 UFSP2 ANKRD37 CCDC110 LOC105377590 PDLIM3 |
nsv428456 | Chr.4:185328666 - 185492417 on Build GRCh38 | Gain+Loss | LRP2BP C4orf47 UFSP2 ANKRD37 CCDC110 LOC105377590 SNX25 |
More Information
Additional Information:
For this assay, SNP(s) [rs75681457] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |