Assay Details
Target Gene Details
Entrez Gene ID: | 254531 |
Gene Name: | lysophosphatidylcholine acyltransferase 4 |
Gene Aliases: |
AGPAT7, AYTL3, LPAAT-eta, LPEAT2 |
Location: |
Chr.15:34358888-34367196 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 11 - Exon 11 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LPCAT4 | NM_153613.2 | NP_705841.2 | ||
XM_006720454.2 | XP_006720517.1 | |||
XM_011521422.1 | XP_011519724.1 | |||
AF007155.1 | AAC19156.1 | |||
AF529233.1 | AAP97722.1 | |||
AF542964.1 | AAN33178.1 | |||
AK290273.1 | ||||
AL832237.1 | ||||
AY734233.1 | AAU34184.1 | |||
BC024892.2 | AAH24892.2 | |||
BC092463.1 | AAH92463.1 | |||
BC144236.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv517751 | Chr.15:34355367 - 34579095 on Build GRCh38 | Gain+Loss | GOLGA8B MIR1233-1 GOLGA8A NUTM1 LPCAT4 MIR1233-2 |
nsv471236 | Chr.15:34360482 - 34508393 on Build GRCh38 | Loss | MIR1233-1 GOLGA8A LPCAT4 |
nsv471682 | Chr.15:34268250 - 34590429 on Build GRCh38 | Gain+Loss | GOLGA8B NOP10 MIR1233-1 SLC12A6 GOLGA8A NUTM1 LPCAT4 MIR1233-2 |
nsv1052620 | Chr.15:32612402 - 34538731 on Build GRCh38 | Gain | MIR1233-1 SLC12A6 PGBD4 GOLGA8A SCG5 TMCO5B AVEN RYR3 CHRM5 LOC101928042 GREM1 GOLGA8B EMC7 NOP10 LOC101928134 LOC100131315 FMN1 EMC4 LOC105370757 NUTM1 ARHGAP11A KATNBL1 LPCAT4 MIR1233-2 |
esv33337 | Chr.15:31689863 - 34575097 on Build GRCh38 | Gain+Loss | MIR1233-1 CHRNA7 LOC101060588 GOLGA8O GOLGA8A SCG5 GOLGA8N AVEN LOC105370940 LOC100996255 RYR3 NOP10 LOC101928134 LOC100131315 FMN1 KATNBL1 SLC12A6 PGBD4 TMCO5B CHRM5 LOC101928042 GREM1 GOLGA8B EMC7 EMC4 LOC100653133 ULK4P1 LOC105370757 NUTM1 ARHGAP11A LPCAT4 GOLGA8K MIR1233-2 WHAMMP1 |
nsv509567 | Chr.15:34345031 - 34396055 on Build GRCh38 | Insertion | MIR1233-1 GOLGA8A NUTM1 LPCAT4 |
nsv1485 | Chr.15:34354006 - 34601539 on Build GRCh38 | Deletion | GOLGA8B MIR1233-1 GOLGA8A NUTM1 LPCAT4 MIR1233-2 |
esv2760024 | Chr.15:34250820 - 34696046 on Build GRCh38 | Gain+Loss | GOLGA8B NOP10 MIR1233-1 SLC12A6 GOLGA8A NUTM1 LPCAT4 MIR1233-2 |
esv3569431 | Chr.15:33564570 - 35080307 on Build GRCh38 | Gain | MIR1233-1 SLC12A6 PGBD4 GOLGA8A AVEN ZNF770 AQR RYR3 CHRM5 LOC101928174 GOLGA8B EMC7 NOP10 EMC4 GJD2 NUTM1 KATNBL1 LPCAT4 ACTC1 MIR1233-2 |
nsv469547 | Chr.15:34302356 - 34465606 on Build GRCh38 | Loss | NOP10 MIR1233-1 SLC12A6 GOLGA8A NUTM1 LPCAT4 |
dgv4456n54 | Chr.15:32604149 - 34557061 on Build GRCh38 | Gain | MIR1233-1 GOLGA8A SCG5 GOLGA8N AVEN RYR3 NOP10 LOC101928134 LOC100131315 FMN1 KATNBL1 SLC12A6 PGBD4 TMCO5B CHRM5 LOC101928042 GREM1 GOLGA8B EMC7 EMC4 LOC105370757 NUTM1 ARHGAP11A LPCAT4 MIR1233-2 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |