Hs02260138_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89895059 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Overlaps Intron 9 - Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2			NP_055787.1
	XM_005256297.2			XP_005256354.1
	XM_005256298.2			XP_005256355.1
	XM_005256299.2			XP_005256356.1
	XM_011522956.2			XP_011521258.1
	XM_011522957.2			XP_011521259.1
	XM_011522958.2			XP_011521260.1
	XM_011522959.2			XP_011521261.1
	XM_011522960.2			XP_011521262.1
	XM_011522961.2			XP_011521263.1
	XM_017023047.1			XP_016878536.1
	XM_017023048.1			XP_016878537.1
	XM_017023049.1			XP_016878538.1
	XM_017023050.1			XP_016878539.1
	XM_017023051.1			XP_016878540.1
	XM_017023052.1			XP_016878541.1
	XM_017023053.1			XP_016878542.1
	XM_017023054.1			XP_016878543.1
	XM_017023055.1			XP_016878544.1
	XM_017023056.1			XP_016878545.1
	XM_017023057.1			XP_016878546.1
	XM_017023058.1			XP_016878547.1
	AB028972.1			BAA83001.1
	AF130092.1			AAG35518.1
	AF322111.1			AAG50276.1
	BC000959.1			AAH00959.1
	BC009349.2			AAH09349.1
	BC011884.2			AAH11884.1
	DQ321703.1			ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv573744	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	TCF25 FANCA ZNF276 LOC105371419 LOC107984817 SPIRE2
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	TCF25 FANCA LOC105371419 LOC107984817 SPIRE2
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	DBNDD1 VPS9D1 TCF25 FANCA DPEP1 GAS8 ZNF276 MC1R LOC105371419 LOC107984817 SPATA2L CENPBD1 SPIRE2 TUBB3 GAS8-AS1 CHMP1A AFG3L1P VPS9D1-AS1 SPATA33 DEF8 CDK10
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	DBNDD1 GAS8-AS1 TCF25 GAS8 AFG3L1P MC1R DEF8 CENPBD1 SPIRE2 TUBB3
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	LOC101927817 VPS9D1 TCF25 TUBB8P7 LOC100287036 DPEP1 ZNF276 SPG7 LOC105371419 CENPBD1 TUBB3 LOC105371414 SNORD68 ZNF778 ANKRD11 CHMP1A URAHP AFG3L1P DEF8 CDK10 DBNDD1 FANCA GAS8 PRDM7 MC1R LOC107984817 SPATA2L SPIRE2 GAS8-AS1 FAM157C RPL13 CPNE7 VPS9D1-AS1 SPATA33
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	DBNDD1 TCF25 GAS8 AFG3L1P MC1R LOC105371419 DEF8 CENPBD1 SPIRE2 TUBB3
nsv1066499	Chr.16:89891957 - 90028891 on Build GRCh38	Loss	DBNDD1 TCF25 GAS8 AFG3L1P MC1R DEF8 CENPBD1 TUBB3
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC101927817 VPS9D1 LOC101927793 TCF25 TUBB8P7 LOC100287036 DPEP1 SPG7 LOC105371419 LOC105371414 SNORD68 CTU2 URAHP APRT SNAI3-AS1 DBNDD1 PABPN1L MIR4722 GAS8 LOC105371409 PRDM7 CYBA IL17C LOC107984817 SPIRE2 LOC339059 CDH15 TRAPPC2L CPNE7 LOC100289580 LOC400558 LINC00304 ZNF276 CBFA2T3 CENPBD1 TUBB3 ZNF778 ANKRD11 SNAI3 CHMP1A PIEZO1 AFG3L1P SLC22A31 DEF8 CDK10 ACSF3 FANCA LOC100129697 MC1R SPATA2L GAS8-AS1 GALNS LOC107987238 RNF166 FAM157C RPL13 MVD VPS9D1-AS1 SPATA33 CDT1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding