Assay Details
Target Gene Details
Entrez Gene ID: | 84231 |
Gene Name: | TNF receptor associated factor 7 |
Gene Aliases: |
RFWD1, RNF119 |
Location: |
Chr.16:2155752-2178129 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 10 - Exon 11 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRAF7 | NM_032271.2 | NP_115647.2 | ||
XM_005255627.4 | XP_005255684.1 | |||
XM_011522700.1 | XP_011521002.1 | |||
AK090624.1 | ||||
AL136921.1 | CAB66855.1 | |||
AY569455.1 | AAS68363.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | LOC100134368 MEIOB NTN3 LOC100287175 MIR940 LOC107987233 HN1L NHLRC4 STUB1 PDIA2 CACNA1H HBA1 WDR90 LINC00235 LOC106660606 HBA2 TRAF7 TELO2 CAPN15 SSTR5 TSC2 C1QTNF8 RAB11FIP3 TPSAB1 GNPTG SLC9A3R2 LOC107984876 TPSG1 SSTR5-AS1 WDR24 MSLN RPUSD1 CASKIN1 LOC105371184 MIR4516 SNORA78 SNHG9 SNORA64 RNF151 HS3ST6 SYNGR3 FLJ42627 AXIN1 ABCA3 PKD1 SOX8 MIR6768 RNPS1 BAIAP3 MIR5587 MAPK8IP3 METRN DECR2 NOXO1 TSR3 UNKL CRAMP1 DNASE1L2 TMEM204 PDPK1 KCTD5 TBC1D24 LOC105371038 ARHGDIG JMJD8 GFER HBM MIR3180-5 NPRL3 LOC105371047 RAB40C CLCN7 ZNF598 PRSS27 LOC105371046 CEMP1 CCDC154 MLST8 RAB26 RPL3L LOC105371049 RPL23AP5 MIR3677 MPG UBE2I RHOT2 CHTF18 MIR1225 SNRNP25 IFT140 IGFALS MIR6859-4 HAGHL NDUFB10 LMF1 SNHG19 MIR4717 LOC652276 RHBDF1 FAM234A TBL3 MRPS34 NME4 LUC7L NTHL1 ERVK13-1 C16orf91 HBQ1 LINC00254 SPSB3 POLR3K PRR35 SNORD60 C16orf59 PRR25 FAM173A TPSD1 METTL26 MIR6767 PGP E4F1 ABCA17P TMEM8A MIR3178 DDX11L10 LOC101929280 CCNF LMF1-AS1 TPSB2 MIR6511B1 MIR662 SNORA10 FAHD1 AMDHD2 PTX4 PIGQ MIR3177 ECI1 MRPL28 WASIR2 RGS11 MIR3176 PRSS29P GNG13 RHBDL1 NME3 NPW HAGH LOC729652 NUBP2 MSRB1 NARFL ATP6V0C BRICD5 LOC105371045 WFIKKN1 MCRIP2 RPS2 EME2 CCDC78 HBZ FBXL16 |
nsv471072 | Chr.16:1971892 - 2317508 on Build GRCh38 | Loss | MIR940 RNPS1 MIR6511B1 NOXO1 DNASE1L2 MIR1225 LOC106660606 SNHG19 ECI1 MIR4717 TRAF7 TBL3 NTHL1 TSC2 NPW SNORD60 GFER SLC9A3R2 MIR3180-5 BRICD5 ZNF598 CASKIN1 MIR4516 MLST8 RAB26 LOC105371049 PGP E4F1 MIR3677 SYNGR3 ABCA3 PKD1 |
dgv4861n54 | Chr.16:2083900 - 2246850 on Build GRCh38 | Loss | MIR6511B1 SNORD60 DNASE1L2 MIR3180-5 MIR1225 BRICD5 CASKIN1 MIR4516 SNHG19 ECI1 TRAF7 MLST8 RAB26 LOC105371049 PGP E4F1 TSC2 PKD1 |
dgv4863n54 | Chr.16:2141733 - 2274302 on Build GRCh38 | Loss | MIR940 RNPS1 SNORD60 DNASE1L2 BRICD5 LOC106660606 CASKIN1 SNHG19 ECI1 TRAF7 MLST8 RAB26 PGP E4F1 MIR3677 |
nsv457349 | Chr.16:2055054 - 2200730 on Build GRCh38 | Loss | CASKIN1 MIR4516 MIR6511B1 SNHG19 TRAF7 RAB26 LOC105371049 SNORD60 TSC2 MIR3180-5 MIR1225 PKD1 |
nsv457351 | Chr.16:2156590 - 2274302 on Build GRCh38 | Loss | LOC106660606 CASKIN1 MIR940 RNPS1 ECI1 TRAF7 MLST8 PGP E4F1 MIR3677 DNASE1L2 BRICD5 |
nsv1052260 | Chr.16:2074546 - 2629655 on Build GRCh38 | Gain | MIR6768 NTN3 MIR940 RNPS1 MIR6511B1 AMDHD2 DNASE1L2 MIR1225 LOC106660606 PDPK1 SNHG19 ECI1 MIR4717 TRAF7 LOC652276 TBC1D24 TSC2 LOC729652 SNORD60 C16orf59 ATP6V0C MIR3180-5 BRICD5 CASKIN1 MIR4516 MIR6767 CEMP1 MLST8 RAB26 LOC105371049 PGP E4F1 MIR3677 ABCA17P MIR3178 ABCA3 PKD1 CCNF |
nsv952902 | Chr.16:2143400 - 2339999 on Build GRCh38 | Deletion | MIR940 RNPS1 SNORD60 DNASE1L2 BRICD5 LOC106660606 CASKIN1 SNHG19 ECI1 MIR4717 TRAF7 MLST8 RAB26 PGP E4F1 MIR3677 ABCA3 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |