Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 2 - Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
XM_017026666.1 | XP_016882155.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | TARM1 TFPT OSCAR VSTM1 NDUFA3 PRPF31 |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | TARM1 MIR935 VSTM1 CACNG6 CACNG8 |
nsv2542 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion | TARM1 OSCAR VSTM1 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | MIR935 VSTM1 CACNG6 CACNG7 CACNG8 |
nsv9750 | Chr.19:54049927 - 54058628 on Build GRCh38 | Gain | VSTM1 |
esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain | VSTM1 |
dgv663e199 | Chr.19:54051591 - 54059132 on Build GRCh38 | Deletion | VSTM1 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR373 LILRB2 MIR1283-2 LOC105372457 MIR518B MIR520G MIR519D ZNF845 NDUFA3 ZNF525 ZNF818P LENG1 MIR935 BIRC8 RPS9 LILRA6 ZNF677 MIR524 MIR515-2 ZNF331 MIR519B MIR515-1 TFPT MIR521-1 MIR526A2 MIR525 MIR519E MIR519A1 MIR516A2 MIR519C MIR520E PRKCG FAM90A27P MIR516B1 MIR520C TSEN34 MIR512-2 ZNF761 MIR517B MIR517A MIR520A VN1R2 MIR4752 ZNF765 MIR512-1 DPRX MIR518D MIR517C CACNG8 PRPF31 MIR518F MIR523 TMC4 TARM1 CACNG6 MIR520D MIR518A1 MIR516A1 CACNG7 LILRB3 LOC284379 TPM3P9 MIR1323 MIR522 MIR498 MIR372 MIR526A1 MIR518C CNOT3 MIR520F MIR527 MIR520H MIR518A2 MIR1283-1 OSCAR MIR519A2 MIR371B MBOAT7 MIR521-2 MIR520B NLRP12 ZNF665 MIR516B2 MIR526B MIR371A LILRA5 MYADM ZNF813 VSTM1 VN1R4 MIR518E LILRB5 |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | TARM1 TFPT OSCAR MIR935 VSTM1 CACNG6 NDUFA3 CACNG8 PRPF31 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |