Assay Details
Target Gene Details
Entrez Gene ID: | 81631 |
Gene Name: | microtubule associated protein 1 light chain 3 beta |
Gene Aliases: |
ATG8F, LC3B, MAP1A/1BLC3, MAP1LC3B-a |
Location: |
Chr.16:87392195-87404774 on Build GRCh38 |
Assay Gene Location: | Within Exon 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
MAP1LC3B | NM_022818.4 | 4 | 1145 | NP_073729.1 |
AF087871.1 | 4 | 1004 | AAM10499.1 | |
AF183417.1 | 4 | 1004 | AAG09686.1 | |
AF303888.1 | 4 | 950 | AAG23182.1 | |
AK024571.1 | 1 | 282 | ||
AK025556.1 | 4 | 996 | BAB15169.1 | |
AK290956.1 | 4 | 1027 | ||
AK310224.1 | 5 | 1112 | ||
AK310335.1 | 4 | 785 | ||
AL834298.1 | 4 | 914 | CAD38970.1 | |
BC018634.2 | 4 | 983 | AAH18634.1 | |
BC041874.1 | 4 | 1540 | AAH41874.1 | |
BC045759.1 | 5 | 1486 | AAH45759.1 | |
BC067797.1 | 4 | 996 | AAH67797.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv499n67 | Chr.16:87353978 - 87409229 on Build GRCh38 | Gain | FBXO31 ZCCHC14 MAP1LC3B |
nsv978173 | Chr.16:87403122 - 87403717 on Build GRCh38 | Duplication | MAP1LC3B |
nsv833320 | Chr.16:87315844 - 87501226 on Build GRCh38 | Gain | C16orf95 FBXO31 ZCCHC14 LOC101928659 LOC101928737 MAP1LC3B |
nsv428330 | Chr.16:87336922 - 87633082 on Build GRCh38 | Gain | FBXO31 ZCCHC14 LOC101928737 MAP1LC3B JPH3 |
More Information
Additional Information:
For this assay, SNP(s) [rs76788332] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |