Assay Details
Target Gene Details
Entrez Gene ID: | 26121 |
Gene Name: | pre-mRNA processing factor 31 |
Gene Aliases: |
NY-BR-99, PRP31, RP11, SNRNP61 |
Location: |
Chr.19:54115410-54131719 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PRPF31 | NM_015629.3 | 1 | 267 | NP_056444.3 |
XM_006723137.3 | 1 | 147 | XP_006723200.1 | |
AY040822.1 | 1 | 228 | AAK77986.1 | |
BC117389.1 | 1 | 191 | ||
CN306666.1 | 1 | 267 |
Target Gene Details
Entrez Gene ID: | 29844 |
Gene Name: | TCF3 fusion partner |
Gene Aliases: |
FB1, INO80F, amida |
Location: |
Chr.19:54107013-54115675 on Build GRCh38 |
Assay Gene Location: | Overlaps - Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TFPT | NM_013342.3 | NP_037474.1 | ||
AF052052.1 | AAD45182.1 | |||
AK310627.1 | ||||
AK310647.1 | ||||
BI820344.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | VSTM1 TFPT OSCAR NDUFA3 TARM1 PRPF31 |
nsv515623 | Chr.19:54102901 - 54179150 on Build GRCh38 | Loss | LENG1 CNOT3 TFPT TMC4 NDUFA3 MBOAT7 PRPF31 |
nsv953613 | Chr.19:54097214 - 54198733 on Build GRCh38 | Deletion | LENG1 CNOT3 TFPT OSCAR TMC4 NDUFA3 MBOAT7 TSEN34 PRPF31 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR4752 LILRB3 MIR518D MIR517A ZNF761 MIR526A2 MIR520E MIR519D MIR518B VN1R4 LOC105372457 MIR1283-1 LILRB5 CNOT3 NLRP12 ZNF818P ZNF813 RPS9 MIR518A2 MIR526A1 TSEN34 PRKCG MIR520H MIR517B MIR516A2 MIR518E TPM3P9 MIR516B1 MIR520F TARM1 MIR371B MIR521-2 MIR519C CACNG8 ZNF331 ZNF845 VSTM1 MIR512-1 LOC284379 MIR517C MIR372 MIR519E FAM90A27P MIR527 MIR519A2 MIR523 MIR522 MIR518A1 MIR498 MIR521-1 MIR519B LILRB2 TFPT OSCAR BIRC8 TMC4 MIR520G LILRA6 MIR515-2 PRPF31 LENG1 MIR516A1 MIR520B MBOAT7 MIR518F VN1R2 MIR519A1 MIR516B2 MIR935 MIR512-2 CACNG7 ZNF765 MIR371A NDUFA3 MIR520A LILRA5 MIR520D MIR525 ZNF525 MIR373 CACNG6 ZNF677 ZNF665 MIR515-1 MIR1323 MYADM MIR526B MIR520C MIR518C MIR1283-2 MIR524 DPRX |
nsv470157 | Chr.19:54063999 - 54127773 on Build GRCh38 | Loss | TFPT OSCAR NDUFA3 TARM1 PRPF31 |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | VSTM1 MIR935 TFPT OSCAR NDUFA3 TARM1 CACNG8 CACNG6 PRPF31 |
More Information
Set Membership: |
Intragenic Exonic Non-exonic DGV Variation |