Assay Details
Target Gene Details
Entrez Gene ID: | 59307 |
Gene Name: | single Ig and TIR domain containing |
Gene Aliases: |
IL-1R8, TIR8 |
Location: |
Chr.11:405716-417454 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 8 - Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SIGIRR | NM_001135053.1 | NP_001128525.1 | ||
NM_001135054.1 | NP_001128526.1 | |||
NM_021805.2 | NP_068577.2 | |||
XM_005253044.2 | XP_005253101.1 | |||
XM_005253045.1 | XP_005253102.1 | |||
XM_005253046.1 | XP_005253103.1 | |||
XM_005253048.4 | XP_005253105.1 | |||
XM_017018099.1 | XP_016873588.1 | |||
XM_017018100.1 | XP_016873589.1 | |||
AK025099.1 | BAB15066.1 | |||
AK093427.1 | 6 | 916 | ||
AK172830.1 | BAD18795.1 | |||
AY358342.1 | AAQ88708.1 | |||
BC003591.1 | AAH03591.1 | |||
BC025953.1 | AAH25953.1 | |||
BC106007.1 | AAI06008.1 | |||
BX369506.2 | ||||
CR457338.1 | CAG33619.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv527327 | Chr.11:295343 - 620599 on Build GRCh38 | Loss | PTDSS2 IFITM5 LOC101059906 MIR210 B4GALNT4 IFITM1 RNH1 MIR210HG IFITM2 LMNTD2 PHRF1 LRRC56 PGGHG IRF7 IFITM3 LOC143666 ANO9 CDHR5 PKP3 SIGIRR RASSF7 HRAS |
nsv469923 | Chr.11:378188 - 1302334 on Build GRCh38 | Loss | MIR210 MUC2 MIR210HG AP2A2 PANO1 LOC171391 LMNTD2 LRRC56 PDDC1 PNPLA2 TSPAN4 LOC101927503 DEAF1 TOLLIP ANO9 MIR6744 EPS8L2 SIGIRR RASSF7 SCT PTDSS2 MUC5B MUC6 LOC101059906 B4GALNT4 RNH1 SNORA52 CRACR2B POLR2L PHRF1 TALDO1 IRF7 TMEM80 SLC25A22 CHID1 CEND1 MUC5AC RPLP2 LOC143666 CDHR5 CD151 DRD4 PKP3 PIDD1 HRAS |
nsv552776 | Chr.11:366710 - 432436 on Build GRCh38 | Loss | B4GALNT4 ANO9 PKP3 SIGIRR |
nsv951268 | Chr.11:368601 - 503700 on Build GRCh38 | Deletion | PTDSS2 B4GALNT4 ANO9 RNH1 PKP3 SIGIRR |
nsv552770 | Chr.11:356090 - 444628 on Build GRCh38 | Gain | B4GALNT4 ANO9 PKP3 SIGIRR |
dgv1505n54 | Chr.11:198510 - 470331 on Build GRCh38 | Gain | PTDSS2 IFITM5 BET1L MIR6743 NLRP6 B4GALNT4 IFITM1 IFITM2 PGGHG IFITM3 RIC8A ANO9 SIRT3 PKP3 ODF3 SIGIRR PSMD13 |
nsv1159790 | Chr.11:340219 - 491334 on Build GRCh38 | Deletion | PTDSS2 B4GALNT4 ANO9 PKP3 SIGIRR |
dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion | MIR210 MIR210HG AP2A2 PANO1 LOC171391 LMNTD2 LRRC56 PDDC1 PNPLA2 TSPAN4 DEAF1 ANO9 EPS8L2 SIGIRR RASSF7 SCT PTDSS2 LOC101059906 B4GALNT4 RNH1 SNORA52 CRACR2B POLR2L PHRF1 TALDO1 IRF7 TMEM80 SLC25A22 CHID1 CEND1 RPLP2 LOC143666 CDHR5 CD151 DRD4 PKP3 PIDD1 HRAS |
nsv552822 | Chr.11:403545 - 408352 on Build GRCh38 | Loss | PKP3 SIGIRR |
More Information
Additional Information:
For this assay, SNP(s) [rs112731199] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |