Assay Details
Target Gene Details
Entrez Gene ID: | 81631 |
Gene Name: | microtubule associated protein 1 light chain 3 beta |
Gene Aliases: |
ATG8F, LC3B, MAP1A/1BLC3, MAP1LC3B-a |
Location: |
Chr.16:87392195-87404774 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
MAP1LC3B | NM_022818.4 | 1 | 107 | NP_073729.1 |
AF087871.1 | AAM10499.1 | |||
AF183417.1 | AAG09686.1 | |||
AK025556.1 | BAB15169.1 | |||
AK290956.1 | ||||
AK310224.1 | ||||
AK310335.1 | ||||
BC041874.1 | 1 | 502 | AAH41874.1 | |
BC067797.1 | AAH67797.1 | |||
BG771621.1 | 1 | 92 | ||
DA577457.1 | ||||
DB055844.1 | 1 | 107 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv499n67 | Chr.16:87353978 - 87409229 on Build GRCh38 | Gain | FBXO31 MAP1LC3B ZCCHC14 |
nsv1131120 | Chr.16:87392294 - 87392794 on Build GRCh38 | Deletion | MAP1LC3B |
nsv833320 | Chr.16:87315844 - 87501226 on Build GRCh38 | Gain | C16orf95 LOC101928659 FBXO31 LOC101928737 MAP1LC3B ZCCHC14 |
nsv428330 | Chr.16:87336922 - 87633082 on Build GRCh38 | Gain | FBXO31 JPH3 LOC101928737 MAP1LC3B ZCCHC14 |
nsv510694 | Chr.16:87276349 - 87400084 on Build GRCh38 | Deletion | C16orf95 LOC101928659 FBXO31 LOC101928682 MAP1LC3B |
More Information
Additional Information:
For this assay, SNP(s) [rs145549507,rs74605057] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |