Assay Details
Target Gene Details
Entrez Gene ID: | 53841 |
Gene Name: | cadherin related family member 5 |
Gene Aliases: |
MLPCDH, MU-PCDH, MUCDHL, MUPCDH |
Location: |
Chr.11:616565-625067 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 2 - Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CDHR5 | NM_001171968.1 | NP_001165439.1 | ||
NM_021924.4 | NP_068743.2 | |||
NM_031264.3 | NP_112554.2 | |||
XM_006718253.3 | XP_006718316.1 | |||
XM_011520188.2 | XP_011518490.1 | |||
XM_011520189.2 | XP_011518491.1 | |||
XM_011520190.2 | XP_011518492.1 | |||
XM_011520191.2 | XP_011518493.1 | |||
AF258675.1 | AAG16732.1 | |||
AF258676.1 | AAG16733.1 | |||
AF258677.1 | ||||
AF258678.1 | ||||
AF258679.1 | ||||
AF276242.1 | AAG30821.1 | |||
AF301909.1 | AAG33495.1 | |||
AK000226.1 | BAA91021.1 | |||
AK000384.1 | BAA91130.1 | |||
AK300991.1 | ||||
AK308040.1 | ||||
AK309157.1 | ||||
AY358368.1 | AAQ88734.1 | |||
BC038405.1 | AAH38405.1 | |||
DA373160.1 | ||||
DQ491193.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv552865 | Chr.11:612843 - 626730 on Build GRCh38 | Loss | IRF7 CDHR5 SCT |
dgv1522n54 | Chr.11:557342 - 656845 on Build GRCh38 | Loss | DRD4 IRF7 RASSF7 CDHR5 SCT LOC143666 MIR210HG LMNTD2 MIR210 PHRF1 DEAF1 |
nsv951270 | Chr.11:528401 - 628100 on Build GRCh38 | Deletion | LRRC56 IRF7 RASSF7 CDHR5 SCT LOC143666 MIR210HG LMNTD2 MIR210 PHRF1 HRAS LOC101059906 |
nsv469923 | Chr.11:378188 - 1302334 on Build GRCh38 | Loss | DRD4 CEND1 LOC171391 RASSF7 TSPAN4 CDHR5 SCT TMEM80 MIR6744 ANO9 EPS8L2 RPLP2 LOC101059906 LRRC56 IRF7 SLC25A22 MUC5AC LMNTD2 PHRF1 AP2A2 CHID1 PTDSS2 CD151 LOC143666 PKP3 TALDO1 MIR210HG MUC5B POLR2L MIR210 HRAS PANO1 PDDC1 SNORA52 MUC2 MUC6 LOC101927503 B4GALNT4 PIDD1 DEAF1 SIGIRR PNPLA2 CRACR2B TOLLIP RNH1 |
nsv552861 | Chr.11:589246 - 662407 on Build GRCh38 | Loss | DRD4 IRF7 CDHR5 SCT PHRF1 DEAF1 |
esv2759794 | Chr.11:409846 - 1336162 on Build GRCh38 | Loss | DRD4 CEND1 LOC171391 RASSF7 TSPAN4 CDHR5 SCT TMEM80 MIR6744 ANO9 EPS8L2 RPLP2 LOC101059906 LRRC56 IRF7 SLC25A22 MUC5AC LMNTD2 PHRF1 AP2A2 CHID1 PTDSS2 CD151 LOC143666 TALDO1 MIR210HG MUC5B POLR2L MIR210 HRAS PANO1 PDDC1 SNORA52 MUC2 TOLLIP-AS1 MUC6 LOC101927503 PIDD1 DEAF1 SIGIRR PNPLA2 CRACR2B TOLLIP RNH1 |
esv2762889 | Chr.11:606294 - 653614 on Build GRCh38 | Loss | DRD4 IRF7 CDHR5 SCT PHRF1 DEAF1 |
nsv1039558 | Chr.11:534242 - 672091 on Build GRCh38 | Gain | DRD4 RASSF7 CDHR5 SCT LOC143666 MIR210HG MIR210 HRAS LRRC56 IRF7 LMNTD2 PHRF1 DEAF1 |
nsv1053964 | Chr.11:491334 - 692433 on Build GRCh38 | Gain | DRD4 PTDSS2 RASSF7 CDHR5 SCT LOC143666 MIR210HG MIR210 HRAS LOC101059906 LRRC56 IRF7 LMNTD2 PHRF1 DEAF1 RNH1 |
dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion | DRD4 CEND1 LOC171391 RASSF7 TSPAN4 CDHR5 SCT TMEM80 ANO9 EPS8L2 RPLP2 LOC101059906 LRRC56 IRF7 SLC25A22 LMNTD2 PHRF1 AP2A2 CHID1 PTDSS2 CD151 LOC143666 PKP3 TALDO1 MIR210HG POLR2L MIR210 HRAS PANO1 PDDC1 SNORA52 B4GALNT4 PIDD1 DEAF1 SIGIRR PNPLA2 CRACR2B RNH1 |
nsv1159791 | Chr.11:461793 - 909492 on Build GRCh38 | Deletion | DRD4 CEND1 LOC171391 RASSF7 TSPAN4 CDHR5 SCT TMEM80 EPS8L2 RPLP2 LOC101059906 LRRC56 IRF7 SLC25A22 LMNTD2 PHRF1 CHID1 PTDSS2 CD151 LOC143666 TALDO1 MIR210HG POLR2L MIR210 HRAS PANO1 PDDC1 SNORA52 PIDD1 DEAF1 PNPLA2 CRACR2B RNH1 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |