Hs01617164_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89883367 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Overlaps Intron 3 - Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2			NP_055787.1
	XM_005256297.2			XP_005256354.1
	XM_005256298.2			XP_005256355.1
	XM_005256299.2			XP_005256356.1
	XM_011522956.2			XP_011521258.1
	XM_011522957.2			XP_011521259.1
	XM_011522958.2			XP_011521260.1
	XM_011522959.2			XP_011521261.1
	XM_011522960.2			XP_011521262.1
	XM_011522961.2			XP_011521263.1
	XM_017023047.1			XP_016878536.1
	XM_017023048.1			XP_016878537.1
	XM_017023049.1			XP_016878538.1
	XM_017023050.1			XP_016878539.1
	XM_017023051.1			XP_016878540.1
	XM_017023052.1			XP_016878541.1
	XM_017023053.1			XP_016878542.1
	XM_017023054.1			XP_016878543.1
	XM_017023055.1			XP_016878544.1
	XM_017023056.1			XP_016878545.1
	XM_017023057.1			XP_016878546.1
	XM_017023058.1			XP_016878547.1
	AF322111.1			AAG50276.1
	AK024679.1			BAB14959.1
	AK301053.1
	BC000959.1			AAH00959.1
	BC009349.2			AAH09349.1
	BC011884.2			AAH11884.1
	BI913551.1
	DQ321703.1			ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv573744	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	LOC107984817 SPIRE2 LOC105371419 ZNF276 TCF25 FANCA
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	LOC107984817 SPIRE2 LOC105371419 TCF25 FANCA
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	LOC107984817 AFG3L1P VPS9D1-AS1 SPIRE2 CHMP1A LOC105371419 VPS9D1 SPATA2L TCF25 DBNDD1 FANCA DPEP1 CDK10 DEF8 SPATA33 TUBB3 ZNF276 CENPBD1 GAS8-AS1 MC1R GAS8
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	AFG3L1P DEF8 SPIRE2 TUBB3 CENPBD1 TCF25 GAS8-AS1 DBNDD1 MC1R GAS8
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	LOC107984817 LOC101927817 AFG3L1P VPS9D1-AS1 SPIRE2 RPL13 LOC105371419 SPG7 SPATA2L TCF25 DBNDD1 SNORD68 PRDM7 FAM157C DPEP1 CDK10 DEF8 URAHP TUBB8P7 CENPBD1 GAS8-AS1 MC1R GAS8 ANKRD11 CHMP1A VPS9D1 LOC105371414 FANCA ZNF778 SPATA33 TUBB3 ZNF276 CPNE7 LOC100287036
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	AFG3L1P DEF8 SPIRE2 LOC105371419 TUBB3 CENPBD1 TCF25 DBNDD1 MC1R GAS8
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC107984817 LOC101927817 TRAPPC2L MIR4722 CDT1 AFG3L1P VPS9D1-AS1 LOC101927793 LOC105371419 PABPN1L SPATA2L LINC00304 TCF25 SNORD68 CDK10 LOC105371409 DEF8 URAHP SNAI3 CENPBD1 GALNS MVD GAS8 LOC100289580 CBFA2T3 CHMP1A VPS9D1 LOC105371414 CYBA FANCA LOC400558 ACSF3 SNAI3-AS1 ZNF778 SPATA33 ZNF276 CPNE7 CDH15 SPIRE2 RPL13 SPG7 IL17C DBNDD1 PIEZO1 LOC100129697 LOC107987238 PRDM7 FAM157C DPEP1 LOC339059 TUBB8P7 APRT GAS8-AS1 MC1R SLC22A31 ANKRD11 RNF166 CTU2 TUBB3 LOC100287036

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding