Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 1 - Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
XM_017026666.1 | XP_016882155.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | VSTM1 NDUFA3 TARM1 PRPF31 TFPT OSCAR |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | MIR935 VSTM1 TARM1 CACNG8 CACNG6 |
nsv2542 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion | VSTM1 TARM1 OSCAR |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | CACNG7 MIR935 VSTM1 CACNG8 CACNG6 |
esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain | VSTM1 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR521-1 MIR526A1 MIR520C ZNF331 MIR520B MIR1323 MIR371A MBOAT7 MIR516A2 DPRX LILRB3 MIR516B2 ZNF665 VN1R2 NDUFA3 MIR518E MIR517C MIR518D MIR520E MIR517A OSCAR MIR518F MIR518A2 MIR527 MIR521-2 ZNF765 MIR517B MIR512-1 ZNF845 ZNF677 VN1R4 MIR520A MIR520F RPS9 MYADM MIR522 TARM1 MIR371B MIR372 TMC4 ZNF761 TPM3P9 MIR518C PRPF31 TFPT MIR520H MIR520G LENG1 MIR519B LILRB2 PRKCG CACNG6 MIR523 MIR526B LOC105372457 ZNF525 BIRC8 MIR4752 MIR519C MIR518B MIR498 CNOT3 MIR519A2 MIR518A1 MIR519E MIR373 MIR935 MIR516A1 MIR519D CACNG8 MIR516B1 MIR515-2 MIR519A1 MIR526A2 MIR525 NLRP12 ZNF818P MIR524 MIR1283-2 ZNF813 CACNG7 FAM90A27P VSTM1 MIR1283-1 LOC284379 LILRB5 MIR520D TSEN34 MIR515-1 LILRA5 LILRA6 MIR512-2 |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | MIR935 VSTM1 NDUFA3 TARM1 CACNG8 CACNG6 PRPF31 TFPT OSCAR |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |