Hs01549058_cn

• Gene Symbol: SAPCD2
• Assay Reference Genome Location: Chr.9:137065127 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 89958
• Gene Name: suppressor APC domain containing 2
• Gene Aliases: C9orf140, p42.3
• Location: Chr.9:137062127-137070576 on Build GRCh38
• Assay Gene Location: Overlaps Intron 4 - Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SAPCD2	NM_178448.3			NP_848543.2
	XM_011519180.2			XP_011517482.1
	BC048267.1			AAH48267.1
	DQ150361.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	CLIC3 C9orf139 NPDC1 ABCA2 GRIN1 C9orf142 MAN1B1 DPP7 ENTPD2 UAP1L1 MIR3621 PTGDS FUT7 PRR31 LOC101930307 TMEM210 LCNL1 MAN1B1-AS1 SAPCD2 LRRC26
nsv831761	Chr.9:137049674 - 137166473 on Build GRCh38	Loss	ENTPD2 UAP1L1 LOC101930307 MAN1B1-AS1 SAPCD2 GRIN1 MAN1B1 DPP7
nsv616006	Chr.9:137057859 - 137083633 on Build GRCh38	Loss	UAP1L1 SAPCD2
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	SLC34A3 C9orf172 CLIC3 MIR4292 C9orf139 SSNA1 RNF224 PHPT1 MIR7114 NDOR1 MIR4479 C8G C9orf173-AS1 LRRC26 STPG3 TPRN ENTPD8 GRIN1 MAMDC4 DPP7 ENTPD2 TUBB4B ANAPC2 CCDC183-AS1 NOXA1 MAN1B1-AS1 CYSRT1 EDF1 RNF208 NPDC1 LCN12 C9orf142 PTGDS FUT7 PRR31 CCDC183 TMEM210 LCNL1 FBXW5 TRAF2 NRARP RABL6 ABCA2 MAN1B1 EXD3 PNPLA7 UAP1L1 MIR3621 NSMF LOC101930307 FAM166A NELFB SAPCD2 TMEM203 TOR4A
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	CLIC3 C9orf139 NPDC1 LCN12 ABCA2 C9orf142 MAN1B1 DPP7 ENTPD2 UAP1L1 PTGDS FUT7 PRR31 C8G LOC101930307 LCNL1 MAN1B1-AS1 SAPCD2
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	C9orf172 CLIC3 MIR4292 C9orf139 PHPT1 SNAPC4 SNHG7 MIR4479 TMEM141 C8G HSPC324 LCN15 LRRC26 LOC100128593 MIR4673 LCN6 LCN10 FAM69B AGPAT2 GRIN1 MAMDC4 DPP7 ENTPD2 CCDC183-AS1 MAN1B1-AS1 LCN8 SNORA17B PMPCA EDF1 NOTCH1 NPDC1 DNLZ CARD9 LCN12 C9orf142 PTGDS C9orf163 FUT7 PRR31 CCDC183 TMEM210 LCNL1 FBXW5 NALT1 INPP5E TRAF2 SNORA17A RABL6 ABCA2 MAN1B1 UAP1L1 MIR3621 SDCCAG3 MIR4674 LOC101930307 SEC16A SAPCD2 MIR126 LINC01451 EGFL7 MIR6722
nsv616005	Chr.9:137036493 - 137173890 on Build GRCh38	Loss	C9orf139 NPDC1 GRIN1 MAN1B1 DPP7 ENTPD2 UAP1L1 MIR3621 LOC101930307 TMEM210 MAN1B1-AS1 SAPCD2 LRRC26
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	C9orf139 NPDC1 SSNA1 GRIN1 MAN1B1 DPP7 ENTPD2 UAP1L1 MIR3621 ANAPC2 FUT7 LOC101930307 TMEM210 MAN1B1-AS1 SAPCD2 LRRC26
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	SLC34A3 C9orf172 CLIC3 MIR4292 C9orf139 SSNA1 RNF224 PHPT1 NDOR1 SNHG7 MIR4479 TMEM141 C8G HSPC324 C9orf173-AS1 LCN15 LRRC26 STPG3 LOC100128593 TPRN LCN6 LCN10 FAM69B AGPAT2 GRIN1 MAMDC4 DPP7 ENTPD2 TUBB4B ANAPC2 CCDC183-AS1 MAN1B1-AS1 LCN8 CYSRT1 SNORA17B EDF1 RNF208 NPDC1 LCN12 C9orf142 PTGDS FUT7 PRR31 CCDC183 TMEM210 LCNL1 FBXW5 TRAF2 SNORA17A NRARP RABL6 ABCA2 MAN1B1 EXD3 UAP1L1 MIR3621 LOC101930307 FAM166A NELFB SAPCD2 TMEM203 MIR126 TOR4A LINC01451 EGFL7 MIR6722
nsv982354	Chr.9:137057355 - 137073859 on Build GRCh38	Duplication	SAPCD2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation