Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Exon 13 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | 9 | 742 | NP_001275720.1 |
NM_001288792.1 | 8 | 858 | NP_001275721.1 | |
NM_001288793.1 | 6 | 591 | NP_001275722.1 | |
NM_198481.3 | 9 | 951 | NP_940883.2 | |
NR_110142.1 | 10 | 1040 | ||
XM_011526845.1 | 10 | 1348 | XP_011525147.1 | |
XM_011526846.1 | 10 | 1258 | XP_011525148.1 | |
XM_011526847.1 | 11 | 1326 | XP_011525149.1 | |
XM_011526848.1 | 9 | 1165 | XP_011525150.1 | |
XM_011526849.1 | 9 | 1054 | XP_011525151.1 | |
AI457604.1 | 1 | 84 | ||
AY358542.1 | 9 | 960 | AAQ88906.1 | |
BC100943.2 | 8 | 835 | AAI00944.1 | |
BG189223.1 | 5 | 390 | ||
BQ446114.1 | 1 | 82 | ||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | OSCAR NDUFA3 PRPF31 TFPT TARM1 VSTM1 |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | CACNG8 TARM1 VSTM1 CACNG6 MIR935 |
nsv1057516 | Chr.19:53986233 - 54046901 on Build GRCh38 | Gain | CACNG8 VSTM1 CACNG6 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | CACNG7 CACNG8 VSTM1 CACNG6 MIR935 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR1283-2 MIR527 MIR521-1 MIR525 MIR519E LOC105372457 ZNF813 CACNG8 MIR519C MIR517C MIR526B MIR373 PRKCG MIR498 MIR519B MIR520F MIR516A1 MIR526A2 MIR518E MIR1283-1 MIR520A MIR523 MIR519D CACNG7 MIR526A1 MYADM TFPT TMC4 LENG1 MIR516B1 BIRC8 MBOAT7 MIR520C MIR517B ZNF761 LILRA6 PRPF31 VSTM1 LILRB2 MIR516A2 MIR520E NLRP12 MIR520B RPS9 MIR521-2 FAM90A27P MIR518D MIR522 ZNF677 LOC284379 MIR518A1 VN1R4 MIR519A2 ZNF525 DPRX ZNF665 MIR515-1 VN1R2 MIR371B ZNF818P MIR520H MIR4752 MIR518A2 LILRB3 NDUFA3 ZNF765 MIR512-1 TARM1 ZNF331 MIR518F MIR518C MIR372 MIR516B2 MIR520G LILRB5 LILRA5 TSEN34 ZNF845 MIR518B MIR524 TPM3P9 MIR512-2 MIR515-2 CNOT3 OSCAR MIR520D MIR1323 MIR517A MIR519A1 CACNG6 MIR371A MIR935 |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | OSCAR CACNG8 NDUFA3 PRPF31 TFPT TARM1 VSTM1 CACNG6 MIR935 |
nsv820269 | Chr.19:54040652 - 54041356 on Build GRCh38 | Gain | VSTM1 |
More Information
Additional Information:
For this assay, SNP(s) [rs200587635,rs369366127] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |