Assay Details
Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SCAF1 | NM_021228.2 | 7 | 2881 | NP_067051.2 |
XM_005259122.4 | 7 | 3164 | XP_005259179.1 | |
XM_011527194.2 | 7 | 2806 | XP_011525496.1 | |
XM_017027083.1 | 4 | 2608 | XP_016882572.1 | |
AK024444.1 | 7 | 2881 | ||
BC011662.2 | AAH11662.2 | |||
BC018398.1 | 1 | 272 | AAH18398.1 | |
BC053992.1 | 6 | 2768 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss | MIR5088 CPT1C BCL2L12 RRAS ADM5 IRF3 SCAF1 PRMT1 NOSIP PRRG2 PRR12 |
nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss | MIR5088 CPT1C BCL2L12 RRAS ADM5 IRF3 SCAF1 PRMT1 NOSIP PRRG2 PRR12 |
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | GRWD1 CYTH2 CGB1 LIN7B RPL18 IRF3 MIR6799 PPP1R15A SIGLEC16 MAMSTR SNAR-A3 NUCB1 NTN5 BAX SNAR-D SNAR-A7 SLC6A16 FTL CGB3 CGB8 FGF21 FUT2 PIH1D1 SULT2B1 LOC100287477 SNORD33 NTF4 DKKL1 PRRG2 AP2A1 SNAR-C3 LOC101928295 BCL2L12 SPACA4 FLJ26850 SNAR-A14 TSKS PNKP TBC1D17 EMP3 TEAD2 DHDH TULP2 PLA2G4C-AS1 SNAR-A12 AKT1S1 SIGLEC11 FAM83E GRIN2D FCGRT HRC MIR5088 SNAR-A6 CGB7 ATF5 RPS11 CGB5 IL4I1 NOSIP SNAR-A11 SNAR-C4 PLEKHA4 SNAR-A4 RCN3 FLT3LG KDELR1 PTOV1-AS1 SNAR-A10 LMTK3 SCAF1 PRMT1 SNORD35B SNAR-C2 ELSPBP1 RPL13A RRAS CD37 MIR4750 SNORD34 LHB SNAR-A13 DBP SNAR-B1 SLC17A7 PTOV1 PRR12 SEC1P SNAR-C5 LOC101059948 CCDC155 MIR4751 CGB2 SNORD32A SNAR-B2 MIR150 CA11 PTOV1-AS2 RUVBL2 TRPM4 MIR6800 SNAR-A5 PTH2 KCNA7 C19orf73 MIR4749 SNAR-G1 SNAR-G2 BCAT2 CCDC114 LIG1 TMEM143 VRK3 SNAR-A8 BSPH1 LOC105372430 RASIP1 SPHK2 ZNF114 C19orf68 KCNJ14 ALDH16A1 NUCB1-AS1 CARD8-AS1 IZUMO1 SNAR-A1 LOC105447645 ZNF473 NUP62 PLA2G4C SNRNP70 SNAR-A2 SNAR-C1 CABP5 CARD8 PPFIA3 ADM5 SYNGR4 FUT1 CPT1C GYS1 MED25 HSD17B14 SNORD35A GFY MIR6798 SNAR-A9 MIR4324 FUZ |
nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain | MIR5088 CPT1C BCL2L12 RRAS ADM5 IRF3 SCAF1 PRMT1 PRR12 |
nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss | IRF3 SCAF1 |
nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion | RRAS AKT1S1 MIR4750 IRF3 MIR6799 PTOV1 PRR12 MIR5088 ATF5 MIR4751 IL4I1 PTOV1-AS2 NOSIP NUP62 MIR6800 MIR4749 ADM5 PRRG2 AP2A1 CPT1C MED25 BCL2L12 PTOV1-AS1 TSKS FUZ SCAF1 PRMT1 PNKP TBC1D17 |
nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain | MIR5088 CPT1C BCL2L12 RRAS ADM5 IRF3 SCAF1 PRMT1 NOSIP PRRG2 PRR12 |
nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion | RPL13A RRAS SNORD34 IRF3 FCGRT MIR6799 PRR12 MIR5088 RPS11 SNORD32A MIR150 NOSIP MIR6800 ADM5 SNORD33 RCN3 PRRG2 AP2A1 CPT1C MED25 BCL2L12 SNORD35A PTOV1-AS1 TSKS FUZ SCAF1 PRMT1 SNORD35B |
nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss | BCL2L12 RRAS IRF3 SCAF1 PRMT1 NOSIP PRRG2 PRR12 |
nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss | IRF3 SCAF1 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |