Assay Details
Target Gene Details
Entrez Gene ID: | 83903 |
Gene Name: | germ cell associated 2, haspin |
Gene Aliases: |
HASPIN |
Location: |
Chr.17:3723903-3726699 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GSG2 | NM_031965.2 | 1 | 2001 | NP_114171.2 |
AB039834.3 | 1 | 1998 | ||
AF289865.1 | 1 | 1997 | AAK30300.1 | |
AK056691.1 | BAB71255.1 | |||
AK292715.1 | 1 | 1987 | ||
AK310546.1 | ||||
AK315247.1 | 1 | 2001 | ||
BC016626.1 | 1 | 1987 | ||
BC047457.1 | 1 | 1982 | AAH47457.1 |
Target Gene Details
Entrez Gene ID: | 3682 |
Gene Name: | integrin subunit alpha E |
Gene Aliases: |
CD103, HUMINAE |
Location: |
Chr.17:3714625-3803766 on Build GRCh38 |
Assay Gene Location: | Within Intron 27 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ITGAE | NM_002208.4 | NP_002199.3 | ||
XM_011523823.2 | XP_011522125.1 | |||
XM_011523825.2 | XP_011522127.1 | |||
XM_011523827.2 | XP_011522129.1 | |||
XM_011523828.2 | XP_011522130.1 | |||
XM_017024586.1 | XP_016880075.1 | |||
BC113436.1 | ||||
BC117207.1 | ||||
L25851.2 | AAB59359.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574237 | Chr.17:3486822 - 3729542 on Build GRCh38 | Loss | TRPV3 ITGAE GSG2 TAX1BP3 EMC6 ASPA P2RX5-TAX1BP3 CTNS P2RX5 SPATA22 SHPK TRPV1 |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | OR1D5 OR1E2 EMC6 P2RX5-TAX1BP3 OR1A2 MIR6776 OR1G1 PAFAH1B1 OR3A3 TRPV1 OR1D2 MIR1253 TAX1BP3 LOC101927911 OR1A1 LOC105371591 ASPA CTNS OR1E1 P2RX5 ATP2A3 SPATA22 CCDC92B CLUH ITGAE GSG2 RAP1GAP2 NCBP3 OR3A1 LOC105371592 OR1D4 SHPK OR3A4P TRPV3 OR3A2 CAMKK1 P2RX1 |
nsv469791 | Chr.17:3700760 - 3885899 on Build GRCh38 | Loss | ITGAE GSG2 NCBP3 CAMKK1 |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | ITGAE GSG2 OR1E2 NCBP3 EMC6 P2RX5-TAX1BP3 OR3A3 SHPK TRPV1 TRPV3 TAX1BP3 OR3A2 ASPA CTNS CAMKK1 OR1E1 P2RX5 SPATA22 |
nsv833342 | Chr.17:3626188 - 3806082 on Build GRCh38 | Loss | ITGAE GSG2 TAX1BP3 EMC6 P2RX5-TAX1BP3 CTNS P2RX5 SHPK |
More Information
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |