Assay Details
Target Gene Details
Entrez Gene ID: | 146712 |
Gene Name: | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 |
Gene Aliases: |
3-Gn-T8, B3GNT8, BGnT-8, beta-1, beta3Gn-T8, beta3GnTL1 |
Location: |
Chr.17:82942149-83051845 on Build GRCh38 |
Assay Gene Location: | Within Exon 20 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
B3GNTL1 | NM_001009905.2 | 13 | 2334 | NP_001009905.1 |
NM_001320742.1 | 14 | 2452 | NP_001307671.1 | |
NM_001320743.1 | 9 | 2929 | NP_001307672.1 | |
NR_135465.1 | 14 | 2689 | ||
NR_135466.1 | ||||
AK054757.1 | ||||
BU623325.1 |
Target Gene Details
Entrez Gene ID: | 6904 |
Gene Name: | tubulin folding cofactor D |
Gene Aliases: |
SSD-1, tfcD |
Location: |
Chr.17:82752048-82943186 on Build GRCh38 |
Assay Gene Location: | Within Exon 56 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TBCD | NM_005993.4 | 39 | 4086 | NP_005984.3 |
XM_005256399.4 | 27 | 2883 | XP_005256456.1 | |
XM_005256404.4 | 27 | 2925 | XP_005256461.1 | |
XM_006722290.2 | 38 | 3983 | XP_006722353.1 | |
XM_006722291.3 | 27 | 3207 | XP_006722354.1 | |
XM_006722292.2 | 25 | 2619 | XP_006722355.1 | |
XM_011523589.1 | 34 | 3626 | XP_011521891.1 | |
XM_011523590.1 | 34 | 3707 | XP_011521892.1 | |
XM_011523591.1 | 34 | 3611 | XP_011521893.1 | |
XM_011523593.1 | 33 | 3218 | XP_011521895.1 | |
XM_011523594.1 | 26 | 2688 | XP_011521896.1 | |
XM_011523595.2 | 26 | 2766 | XP_011521897.1 | |
XM_011523597.2 | 24 | 3419 | XP_011521899.1 | |
XM_011523598.1 | 24 | 2477 | XP_011521900.1 | |
XM_011523599.2 | 24 | 3195 | XP_011521901.1 | |
XM_011523600.2 | 25 | 2639 | XP_011521902.1 | |
XM_017024989.1 | 23 | 2333 | XP_016880478.1 | |
XM_017024990.1 | 27 | 2705 | XP_016880479.1 | |
AA421669.1 | ||||
AK057975.1 | 20 | 1964 | ||
BC012824.2 | 12 | 1543 | AAH12824.2 | |
BG254219.1 | 1 | 53 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1067553 | Chr.17:82530808 - 83091923 on Build GRCh38 | Loss | FN3KRP FN3K LOC101929552 LOC105371944 RAB40B FOXK2 B3GNTL1 LOC105376791 WDR45B ZNF750 TBCD METRNL MIR4525 |
dgv3296n100 | Chr.17:82851564 - 83091923 on Build GRCh38 | Gain | LOC105371944 TBCD METRNL B3GNTL1 |
nsv428351 | Chr.17:81152631 - 83064073 on Build GRCh38 | Gain | CEP131 RFNG MCRIP1 NPB GCGR OXLD1 RAB40B SECTM1 ARHGDIA MAFG-AS1 CSNK1D PDE6G HEXDC WDR45B SIRT7 MIR6787 SLC25A10 ASPSCR1 MIR4740 C17orf62 BAHCC1 NPLOC4 C17orf89 MRPL12 LOC101929511 TMEM105 ACTG1 CD7 NOTUM FSCN2 SLC16A3 ZNF750 TBCD TEX19 MIR4525 LINC00482 TSPAN10 FN3K P4HB LOC105371944 NARF STRA13 TEPSIN OGFOD3 RAC3 PCYT2 MIR6786 MAFG PPP1R27 CCDC57 AATK-AS1 LOC100130370 MYADML2 FN3KRP LRRC45 DCXR LOC101929552 FAAP100 ALYREF HGS ARL16 FOXK2 B3GNTL1 LOC105376791 SLC38A10 PYCR1 LOC105371925 SNORD134 MIR3186 CCDC137 UTS2R GPS1 ANAPC11 FASN LOC105376790 DUS1L AATK |
nsv576217 | Chr.17:82937869 - 82960820 on Build GRCh38 | Loss | LOC105371944 TBCD B3GNTL1 |
dgv3297n100 | Chr.17:82879855 - 83048753 on Build GRCh38 | Gain | LOC105371944 TBCD B3GNTL1 |
esv3893052 | Chr.17:82895301 - 83102003 on Build GRCh38 | Gain | LOC105371944 TBCD METRNL B3GNTL1 |
nsv1057153 | Chr.17:82876571 - 83091923 on Build GRCh38 | Loss | LOC105371944 TBCD METRNL B3GNTL1 |
esv21913 | Chr.17:81828123 - 83103548 on Build GRCh38 | Gain+Loss | RFNG MCRIP1 NPB RAB40B SECTM1 ARHGDIA MAFG-AS1 CSNK1D HEXDC WDR45B SIRT7 MIR6787 ASPSCR1 C17orf62 LOC101929511 CD7 NOTUM SLC16A3 ZNF750 TBCD TEX19 MIR4525 FN3K P4HB LOC105371944 NARF STRA13 OGFOD3 RAC3 PCYT2 MAFG PPP1R27 CCDC57 METRNL MYADML2 FN3KRP LRRC45 DCXR LOC101929552 ALYREF FOXK2 B3GNTL1 LOC105376791 PYCR1 SNORD134 UTS2R GPS1 ANAPC11 FASN LOC105376790 DUS1L |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |