Genomic Map
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Target Gene Details
Entrez Gene ID: | 5976 |
Gene Name: | UPF1, RNA helicase and ATPase |
Gene Aliases: |
HUPF1, NORF1, RENT1, pNORF1, smg-2 |
Location: |
Chr.19:18831926-18868232 on Build GRCh38 |
Assay Gene Location: | Within Exon 14 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| UPF1 | NM_001297549.1 | 14 | 2216 | NP_001284478.1 |
| NM_002911.3 | 14 | 2183 | NP_002902.2 | |
| XM_017027105.1 | 14 | 2249 | XP_016882594.1 | |
| XM_017027106.1 | 14 | 2216 | XP_016882595.1 | |
| AF074016.1 | 14 | 2135 | AAC26788.1 | |
| BC039817.1 | 14 | 2180 | AAH39817.1 | |
| D86988.1 | 14 | 2150 | ||
| U59323.1 | 14 | 2083 | AAC51140.1 | |
| U65533.1 | 14 | 2139 | AAC50771.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv470132 | Chr.19:18853633 - 18943911 on Build GRCh38 | Loss |
 UPF1
DDX49
HOMER3
LOC102724360
CERS1
COPE
GDF1
|
| nsv1151217 | Chr.19:18627369 - 19284914 on Build GRCh38 | Deletion |
UPF1
NCAN
BORCS8
HOMER3
RFXANK
HAPLN4
SUGP2
KLHL26
CRTC1
NR2C2AP
SUGP1
BORCS8-MEF2B
ARMC6
TMEM161A
DDX49
LOC102724360
MEF2B
CERS1
SLC25A42
COPE
TM6SF2
GDF1
COMP
|
| nsv833777 | Chr.19:18765126 - 18920267 on Build GRCh38 | Loss |
UPF1
CRTC1
DDX49
CERS1
COPE
GDF1
COMP
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Gene Ontology Categories:
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