Assay Details
Target Gene Details
Entrez Gene ID: | 26168 |
Gene Name: | SUMO1/sentrin/SMT3 specific peptidase 3 |
Gene Aliases: |
SMT3IP1, SSP3, Ulp1 |
Location: |
Chr.17:7561992-7571969 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 5 - Intron 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3 | NM_015670.5 | NP_056485.2 | ||
AF199459.1 | AAL25652.1 | |||
AK000923.1 | 2 | 1263 | ||
AL050283.1 | CAB43384.2 | |||
AL834294.1 | CAD38967.1 | |||
AY008763.1 | AAG33252.1 | |||
BC048306.1 | AAH48306.1 | |||
BC080658.1 | AAH80658.1 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 5 - Intron 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | TMEM256 SAT2 TMEM256-PLSCR3 FBXO39 EIF4A1 NLGN2 NEURL4 YBX2 SNORD10 SLC16A13 DVL2 MIR497HG ALOX12P2 LOC100996842 KCTD11 SENP3-EIF4A1 ZBTB4 GPS2 DLG4 CD68 SNORA48 TNFSF12 CTDNEP1 SLC2A4 SNORA67 ASGR1 PHF23 CHRNB1 MIR324 TMEM102 TNK1 ACAP1 TMEM95 ALOX12 ACADVL SENP3 ELP5 POLR2A CLEC10A FGF11 SOX15 EIF5A RNASEK-C17orf49 MIR497 MPDU1 SHBG BCL6B TNFSF12-TNFSF13 PLSCR3 ATP1B2 SLC16A11 ASGR2 ALOX12-AS1 SLC35G6 GABARAP FXR2 C17orf49 CLDN7 C17orf74 MIR195 SPEM1 TNFSF13 LOC107983988 TEKT1 RNASEK |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | TMEM256 SAT2 TMEM256-PLSCR3 EIF4A1 NLGN2 NEURL4 YBX2 SNORD10 SLC16A13 DVL2 MIR497HG LOC100996842 KCTD11 SENP3-EIF4A1 ZBTB4 GPS2 DLG4 CD68 SNORA48 TNFSF12 CTDNEP1 SLC2A4 WRAP53 SNORA67 ASGR1 PHF23 CHRNB1 MIR324 TMEM102 TNK1 ACAP1 TMEM95 ALOX12 ACADVL SENP3 ELP5 POLR2A CLEC10A FGF11 SOX15 EIF5A RNASEK-C17orf49 MIR497 MPDU1 SHBG BCL6B TNFSF12-TNFSF13 PLSCR3 ATP1B2 SLC16A11 ASGR2 ALOX12-AS1 SLC35G6 GABARAP FXR2 TP53 C17orf49 CLDN7 C17orf74 MIR195 SPEM1 TNFSF13 LOC107983988 RNASEK |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |