Assay Details
Target Gene Details
Entrez Gene ID: | 254531 |
Gene Name: | lysophosphatidylcholine acyltransferase 4 |
Gene Aliases: |
AGPAT7, AYTL3, LPAAT-eta, LPEAT2 |
Location: |
Chr.15:34358888-34367196 on Build GRCh38 |
Assay Gene Location: | Within Exon 16 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LPCAT4 | NM_153613.2 | 14 | 1644 | NP_705841.2 |
XM_011521422.1 | 14 | 1639 | XP_011519724.1 | |
AF007155.1 | 5 | 1127 | AAC19156.1 | |
AF529233.1 | 14 | 1493 | AAP97722.1 | |
AF542964.1 | 14 | 1727 | AAN33178.1 | |
AK290273.1 | 14 | 1615 | ||
AL832237.1 | 14 | 1641 | ||
AY734233.1 | 14 | 1664 | AAU34184.1 | |
BC024892.2 | 7 | 803 | AAH24892.2 | |
BC092463.1 | 14 | 1641 | AAH92463.1 | |
T29943.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv517751 | Chr.15:34355367 - 34579095 on Build GRCh38 | Gain+Loss | MIR1233-2 NUTM1 LPCAT4 MIR1233-1 GOLGA8B GOLGA8A |
nsv471682 | Chr.15:34268250 - 34590429 on Build GRCh38 | Gain+Loss | MIR1233-2 NUTM1 NOP10 LPCAT4 MIR1233-1 GOLGA8B SLC12A6 GOLGA8A |
nsv1052620 | Chr.15:32612402 - 34538731 on Build GRCh38 | Gain | GREM1 MIR1233-2 NOP10 LOC101928042 LOC100131315 KATNBL1 TMCO5B GOLGA8B LOC101928134 SLC12A6 PGBD4 EMC7 GOLGA8A CHRM5 NUTM1 RYR3 FMN1 LPCAT4 SCG5 AVEN EMC4 MIR1233-1 LOC105370757 ARHGAP11A |
esv33337 | Chr.15:31689863 - 34575097 on Build GRCh38 | Gain+Loss | NOP10 CHRNA7 TMCO5B GOLGA8B LOC101928134 LOC101060588 ULK4P1 GOLGA8A RYR3 GOLGA8O FMN1 LPCAT4 SCG5 AVEN ARHGAP11A GREM1 MIR1233-2 LOC101928042 LOC100131315 KATNBL1 GOLGA8N SLC12A6 PGBD4 EMC7 LOC100653133 CHRM5 NUTM1 GOLGA8K LOC100996255 EMC4 WHAMMP1 MIR1233-1 LOC105370757 LOC105370940 |
nsv509567 | Chr.15:34345031 - 34396055 on Build GRCh38 | Insertion | NUTM1 LPCAT4 MIR1233-1 GOLGA8A |
nsv1485 | Chr.15:34354006 - 34601539 on Build GRCh38 | Deletion | MIR1233-2 NUTM1 LPCAT4 MIR1233-1 GOLGA8B GOLGA8A |
esv2760024 | Chr.15:34250820 - 34696046 on Build GRCh38 | Gain+Loss | MIR1233-2 NUTM1 NOP10 LPCAT4 MIR1233-1 GOLGA8B SLC12A6 GOLGA8A |
esv3569431 | Chr.15:33564570 - 35080307 on Build GRCh38 | Gain | MIR1233-2 NOP10 KATNBL1 LOC101928174 GOLGA8B SLC12A6 PGBD4 GJD2 EMC7 ZNF770 GOLGA8A CHRM5 NUTM1 RYR3 LPCAT4 AVEN EMC4 MIR1233-1 ACTC1 AQR |
nsv469547 | Chr.15:34302356 - 34465606 on Build GRCh38 | Loss | NUTM1 NOP10 LPCAT4 MIR1233-1 SLC12A6 GOLGA8A |
dgv4456n54 | Chr.15:32604149 - 34557061 on Build GRCh38 | Gain | NOP10 TMCO5B GOLGA8B LOC101928134 GOLGA8A RYR3 FMN1 LPCAT4 SCG5 AVEN ARHGAP11A GREM1 MIR1233-2 LOC101928042 LOC100131315 KATNBL1 GOLGA8N SLC12A6 PGBD4 EMC7 CHRM5 NUTM1 EMC4 MIR1233-1 LOC105370757 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |