Assay Details
Target Gene Details
Entrez Gene ID: | 5730 |
Gene Name: | prostaglandin D2 synthase |
Gene Aliases: |
L-PGDS, LPGDS, PDS, PGD2, PGDS, PGDS2 |
Location: |
Chr.9:136977504-136981742 on Build GRCh38 |
Assay Gene Location: | Overlaps - Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PTGDS | NM_000954.5 | NP_000945.3 | ||
AK075333.1 | ||||
AK312817.1 | ||||
BG037037.1 | ||||
BM686612.1 | ||||
M61900.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv615997 | Chr.9:136977199 - 136984376 on Build GRCh38 | Loss | LCNL1 PTGDS |
nsv615991 | Chr.9:136972675 - 137011907 on Build GRCh38 | Loss | CLIC3 ABCA2 C9orf142 PRR31 LCNL1 PTGDS |
dgv13007n54 | Chr.9:136966179 - 137173890 on Build GRCh38 | Loss | CLIC3 UAP1L1 MAN1B1-AS1 ABCA2 ENTPD2 PRR31 MIR3621 C9orf139 NPDC1 PTGDS TMEM210 SAPCD2 FUT7 LOC101930307 MAN1B1 C9orf142 DPP7 LCNL1 LRRC26 GRIN1 |
nsv615995 | Chr.9:136976551 - 136978985 on Build GRCh38 | Loss | PTGDS |
nsv615993 | Chr.9:136975638 - 136983246 on Build GRCh38 | Gain | LCNL1 PTGDS |
nsv818738 | Chr.9:136740043 - 137009585 on Build GRCh38 | Gain | CLIC3 ABCA2 MIR4479 CCDC183 LOC100128593 MAMDC4 LCN8 RABL6 C8G PTGDS CCDC183-AS1 TMEM141 LCN12 FBXW5 TRAF2 LCN6 C9orf172 MIR6722 LCN15 PRR31 LCN10 EDF1 C9orf142 MIR4292 PHPT1 LCNL1 |
nsv615994 | Chr.9:136975930 - 136979942 on Build GRCh38 | Gain | PTGDS |
nsv524322 | Chr.9:136795692 - 137482216 on Build GRCh38 | Loss | TOR4A MIR4479 CCDC183 MIR7114 ANAPC2 PTGDS LCN12 FBXW5 NSMF MAN1B1 SSNA1 ENTPD2 PRR31 STPG3 EXD3 C9orf173-AS1 NRARP PNPLA7 TUBB4B TPRN C9orf142 PHPT1 NOXA1 CLIC3 UAP1L1 ABCA2 MAMDC4 MIR3621 RABL6 C8G CCDC183-AS1 LOC101930307 NDOR1 TMEM203 RNF224 GRIN1 TRAF2 C9orf172 MAN1B1-AS1 FAM166A SLC34A3 RNF208 C9orf139 NPDC1 NELFB TMEM210 ENTPD8 EDF1 SAPCD2 FUT7 MIR4292 DPP7 CYSRT1 LCNL1 LRRC26 |
nsv951206 | Chr.9:136944849 - 137114548 on Build GRCh38 | Deletion | CLIC3 UAP1L1 MAN1B1-AS1 ABCA2 ENTPD2 PRR31 C9orf139 NPDC1 C8G PTGDS SAPCD2 LCN12 FUT7 LOC101930307 MAN1B1 C9orf142 DPP7 LCNL1 |
nsv469918 | Chr.9:136359865 - 137173890 on Build GRCh38 | Loss | MIR4479 CCDC183 LOC100128593 PTGDS NALT1 MIR4673 SNORA17A LCN12 FBXW5 MIR4674 MAN1B1 MIR6722 SNAPC4 FAM69B ENTPD2 C9orf163 LCN15 CARD9 PRR31 NOTCH1 LCN10 INPP5E SDCCAG3 C9orf142 PHPT1 CLIC3 UAP1L1 ABCA2 SNHG7 MAMDC4 MIR3621 LCN8 RABL6 C8G CCDC183-AS1 DNLZ SNORA17B TMEM141 LOC101930307 MIR126 EGFL7 GRIN1 TRAF2 LCN6 C9orf172 MAN1B1-AS1 LINC01451 C9orf139 NPDC1 SEC16A TMEM210 EDF1 SAPCD2 FUT7 PMPCA HSPC324 MIR4292 AGPAT2 DPP7 LCNL1 LRRC26 |
esv2422220 | Chr.9:136584135 - 137350098 on Build GRCh38 | Deletion | TOR4A MIR4479 CCDC183 LOC100128593 ANAPC2 PTGDS SNORA17A LCN12 FBXW5 MAN1B1 SSNA1 MIR6722 FAM69B ENTPD2 LCN15 PRR31 LCN10 STPG3 EXD3 C9orf173-AS1 NRARP TUBB4B TPRN C9orf142 PHPT1 CLIC3 UAP1L1 ABCA2 SNHG7 MAMDC4 MIR3621 LCN8 RABL6 C8G CCDC183-AS1 SNORA17B TMEM141 LOC101930307 MIR126 NDOR1 TMEM203 RNF224 EGFL7 GRIN1 TRAF2 LCN6 C9orf172 MAN1B1-AS1 FAM166A SLC34A3 LINC01451 RNF208 C9orf139 NPDC1 NELFB TMEM210 EDF1 SAPCD2 FUT7 HSPC324 MIR4292 AGPAT2 DPP7 CYSRT1 LCNL1 LRRC26 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |