Assay Details
Target Gene Details
Entrez Gene ID: | 79680 |
Gene Name: | chromosome 22 open reading frame 29 |
Gene Aliases: |
BOP |
Location: |
Chr.22:19846138-19854848 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
C22orf29 | NM_024627.5 | 3 | 4752 | NP_078903.3 |
AK026924.1 | 1 | 699 | ||
BX640785.1 | 2 | 4841 | CAE45875.1 | |
BX640969.1 | 3 | 4721 | CAE45984.1 | |
BX640998.1 | 3 | 4721 | CAE46001.1 |
Target Gene Details
Entrez Gene ID: | 54584 |
Gene Name: | G protein subunit beta 1 like |
Gene Aliases: |
DGCRK3, FKSG1, GY2, WDR14, WDVCF |
Location: |
Chr.22:19788411-19854939 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GNB1L | NM_053004.2 | NP_443730.1 | ||
AB051432.1 | ||||
AF238328.1 | AAG36826.1 | |||
AF301895.1 | AAG53933.1 | |||
AY007378.1 | AAG12162.1 | |||
BC012060.1 | AAH12060.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv834129 | Chr.22:19705617 - 19919068 on Build GRCh38 | Loss | SEPT5-GP1BB TXNRD2 TBX1 GNB1L C22orf29 SEPT5 GP1BB |
nsv953024 | Chr.22:19842078 - 19854877 on Build GRCh38 | Deletion | GNB1L C22orf29 |
esv3893434 | Chr.22:19470889 - 20343372 on Build GRCh38 | Gain | TRMT2A ZDHHC8 LINC00895 MIR185 TANGO2 RANBP1 C22orf29 GP1BB MIR1286 ARVCF CLDN5 DGCR8 TXNRD2 DGCR6L LOC101927859 MIR3618 SEPT5-GP1BB RTN4R MIR1306 TBX1 UFD1L GNB1L COMT SEPT5 LOC284865 CCDC188 CDC45 LINC00896 MIR6816 LOC440792 MIR4761 |
nsv828939 | Chr.22:19696032 - 20324465 on Build GRCh38 | Loss | TRMT2A ZDHHC8 MIR185 TANGO2 RANBP1 C22orf29 GP1BB MIR1286 ARVCF DGCR8 TXNRD2 DGCR6L MIR3618 SEPT5-GP1BB RTN4R MIR1306 TBX1 GNB1L COMT SEPT5 LOC284865 CCDC188 LINC00896 MIR6816 LOC440792 MIR4761 |
nsv828938 | Chr.22:19691069 - 20324465 on Build GRCh38 | Gain | TRMT2A ZDHHC8 MIR185 TANGO2 RANBP1 C22orf29 GP1BB MIR1286 ARVCF DGCR8 TXNRD2 DGCR6L MIR3618 SEPT5-GP1BB RTN4R MIR1306 TBX1 GNB1L COMT SEPT5 LOC284865 CCDC188 LINC00896 MIR6816 LOC440792 MIR4761 |
nsv834130 | Chr.22:19837923 - 19940567 on Build GRCh38 | Loss | TXNRD2 GNB1L C22orf29 |
esv3568260 | Chr.22:19777375 - 19881883 on Build GRCh38 | Loss | TXNRD2 TBX1 GNB1L C22orf29 |
esv3647279 | Chr.22:19719848 - 19878980 on Build GRCh38 | Gain | SEPT5-GP1BB TXNRD2 TBX1 GNB1L C22orf29 SEPT5 GP1BB |
dgv7983n54 | Chr.22:19762002 - 20321870 on Build GRCh38 | Gain | TRMT2A ZDHHC8 RTN4R MIR1306 TBX1 MIR185 GNB1L TANGO2 RANBP1 C22orf29 COMT LOC284865 CCDC188 MIR1286 ARVCF LINC00896 DGCR8 TXNRD2 MIR6816 LOC440792 MIR4761 DGCR6L MIR3618 |
esv3575418 | Chr.22:18161776 - 19963846 on Build GRCh38 | Gain | DGCR5 CLTCL1 LOC642643 TSSK2 LINC00895 DGCR9 TMEM191B USP18 PI4KAP1 LINC01311 C22orf29 C22orf39 GP1BB LOC100996415 LOC100996432 CLDN5 TXNRD2 RIMBP3 DGCR10 HIRA SLC25A1 GSC2 DGCR14 SEPT5-GP1BB FAM230A DGCR11 TBX1 UFD1L GNB1L DGCR2 MRPL40 COMT SEPT5 GGT3P PRODH LOC100996401 CDC45 MIR4761 LOC729461 DGCR6 LOC102725072 |
More Information
Additional Information:
For this assay, SNP(s) [rs73379999,rs80122683] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |