Hs01053989_cn

• Gene Symbol: SAPCD2
• Assay Reference Genome Location: Chr.9:137064776 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 89958
• Gene Name: suppressor APC domain containing 2
• Gene Aliases: C9orf140, p42.3
• Location: Chr.9:137062127-137070576 on Build GRCh38
• Assay Gene Location: Overlaps Intron 6 - Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SAPCD2	NM_178448.3			NP_848543.2
	XM_011519180.2			XP_011517482.1
	BC009435.1	1	44	AAH09435.1
	BC048267.1			AAH48267.1
	DQ150361.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	MAN1B1-AS1 SAPCD2 GRIN1 MAN1B1 UAP1L1 FUT7 PTGDS TMEM210 C9orf139 C9orf142 ABCA2 LOC101930307 LRRC26 LCNL1 CLIC3 ENTPD2 NPDC1 PRR31 DPP7 MIR3621
nsv831761	Chr.9:137049674 - 137166473 on Build GRCh38	Loss	MAN1B1-AS1 SAPCD2 GRIN1 ENTPD2 MAN1B1 UAP1L1 DPP7 LOC101930307
nsv616006	Chr.9:137057859 - 137083633 on Build GRCh38	Loss	SAPCD2 UAP1L1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	MAN1B1-AS1 TPRN NELFB C9orf139 C9orf142 ABCA2 LOC101930307 LRRC26 C9orf173-AS1 NOXA1 PRR31 EXD3 SAPCD2 C8G UAP1L1 FUT7 LCN12 EDF1 RABL6 LCNL1 STPG3 CLIC3 FAM166A RNF208 MIR4292 MAMDC4 MIR7114 SSNA1 GRIN1 MAN1B1 RNF224 NRARP TMEM210 NDOR1 FBXW5 CCDC183-AS1 TOR4A ENTPD2 CCDC183 C9orf172 ANAPC2 PNPLA7 TMEM203 CYSRT1 TRAF2 ENTPD8 NSMF TUBB4B PTGDS SLC34A3 MIR4479 PHPT1 NPDC1 DPP7 MIR3621
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	MAN1B1-AS1 SAPCD2 C8G MAN1B1 UAP1L1 FUT7 LCN12 PTGDS C9orf139 C9orf142 ABCA2 LOC101930307 LCNL1 CLIC3 ENTPD2 NPDC1 PRR31 DPP7
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MAN1B1-AS1 TMEM141 LCN10 MIR4673 AGPAT2 C9orf139 C9orf142 ABCA2 LOC101930307 LRRC26 SDCCAG3 PMPCA PRR31 NALT1 SNORA17B SAPCD2 C8G UAP1L1 FUT7 LCN12 EDF1 RABL6 SEC16A NOTCH1 LCN6 LCNL1 CLIC3 C9orf163 MIR4292 MAMDC4 FAM69B GRIN1 MAN1B1 TMEM210 INPP5E LINC01451 FBXW5 CCDC183-AS1 DNLZ SNHG7 EGFL7 ENTPD2 CCDC183 LCN8 C9orf172 CARD9 SNAPC4 MIR6722 TRAF2 LCN15 MIR4674 PTGDS SNORA17A MIR4479 MIR126 PHPT1 NPDC1 DPP7 HSPC324 LOC100128593 MIR3621
nsv616005	Chr.9:137036493 - 137173890 on Build GRCh38	Loss	MAN1B1-AS1 SAPCD2 GRIN1 MAN1B1 UAP1L1 TMEM210 C9orf139 LOC101930307 LRRC26 ENTPD2 NPDC1 DPP7 MIR3621
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	MAN1B1-AS1 SAPCD2 GRIN1 MAN1B1 UAP1L1 FUT7 TMEM210 C9orf139 LOC101930307 LRRC26 ENTPD2 NPDC1 ANAPC2 DPP7 SSNA1 MIR3621
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	MAN1B1-AS1 TMEM141 LCN10 AGPAT2 TPRN NELFB C9orf139 C9orf142 ABCA2 LOC101930307 LRRC26 C9orf173-AS1 PRR31 EXD3 SNORA17B SAPCD2 C8G UAP1L1 FUT7 LCN12 EDF1 RABL6 LCN6 LCNL1 STPG3 CLIC3 FAM166A RNF208 MIR4292 MAMDC4 SSNA1 FAM69B GRIN1 MAN1B1 RNF224 NRARP TMEM210 LINC01451 NDOR1 FBXW5 CCDC183-AS1 TOR4A SNHG7 EGFL7 ENTPD2 CCDC183 LCN8 C9orf172 ANAPC2 TMEM203 CYSRT1 MIR6722 TRAF2 LCN15 TUBB4B PTGDS SLC34A3 SNORA17A MIR4479 MIR126 PHPT1 NPDC1 DPP7 HSPC324 LOC100128593 MIR3621
nsv982354	Chr.9:137057355 - 137073859 on Build GRCh38	Duplication	SAPCD2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation