Assay Details
Target Gene Details
Entrez Gene ID: | 79058 |
Gene Name: | ASPSCR1, UBX domain containing tether for SLC2A4 |
Gene Aliases: |
ASPCR1, ASPL, ASPS, RCC17, TUG, UBXD9, UBXN9 |
Location: |
Chr.17:81977550-82018929 on Build GRCh38 |
Assay Gene Location: | Within Exon 19 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ASPSCR1 | XM_011523601.2 | 16 | 3155 | XP_011521903.1 |
XM_011523602.2 | 16 | 3110 | XP_011521904.1 | |
XM_017025036.1 | 16 | 3230 | XP_016880525.1 | |
XM_017025037.1 | 16 | 3185 | XP_016880526.1 | |
XM_017025038.1 | 17 | 3241 | XP_016880527.1 | |
XM_017025039.1 | 17 | 3158 | XP_016880528.1 | |
XM_017025040.1 | 16 | 3095 | XP_016880529.1 | |
XM_017025041.1 | 15 | 3098 | XP_016880530.1 |
Target Gene Details
Entrez Gene ID: | 201254 |
Gene Name: | stimulated by retinoic acid 13 |
Gene Aliases: |
CENP-X, CENPX, D9, FAAP10, MHF2 |
Location: |
Chr.17:82018703-82022930 on Build GRCh38 |
Assay Gene Location: | Overlaps - Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
STRA13 | NM_001271006.1 | NP_001257935.1 | ||
NM_001271007.1 | NP_001257936.1 | |||
NM_144998.3 | NP_659435.2 | |||
XM_005256339.2 | XP_005256396.1 | |||
XM_017024326.1 | XP_016879815.1 | |||
XM_017024327.1 | XP_016879816.1 | |||
XM_017024328.1 | XP_016879817.1 | |||
XM_017024329.1 | XP_016879818.1 | |||
BC009571.1 | AAH09571.1 | |||
BC011610.1 | AAH11610.1 | |||
BI837753.1 | ||||
BQ648002.1 | ||||
U95006.1 | AAB53638.1 | |||
U95007.1 | AAB53639.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv952392 | Chr.17:81885825 - 82065724 on Build GRCh38 | Deletion | LRRC45 MAFG-AS1 ALYREF PYCR1 ANAPC11 DUS1L DCXR GPS1 RFNG NPB STRA13 PCYT2 SIRT7 RAC3 NOTUM MAFG ASPSCR1 MYADML2 |
nsv576183 | Chr.17:81991355 - 82086850 on Build GRCh38 | Loss | LRRC45 RAC3 DUS1L DCXR GPS1 ASPSCR1 RFNG STRA13 FASN |
nsv428351 | Chr.17:81152631 - 83064073 on Build GRCh38 | Gain | MRPL12 FN3KRP PYCR1 DUS1L DCXR P4HB LINC00482 PPP1R27 TEPSIN SIRT7 LOC101929511 MAFG GCGR SNORD134 FN3K CD7 LOC105376790 MIR6787 MAFG-AS1 OXLD1 C17orf89 ALYREF LOC105371925 NPLOC4 PCYT2 MIR4740 AATK-AS1 ARL16 SECTM1 CSNK1D RAC3 TBCD LOC105376791 WDR45B LOC105371944 AATK ANAPC11 HGS GPS1 ACTG1 RFNG NPB STRA13 CEP131 SLC25A10 MCRIP1 MIR3186 NARF FOXK2 LOC100130370 TMEM105 HEXDC ARHGDIA FASN B3GNTL1 MYADML2 LRRC45 FSCN2 CCDC57 C17orf62 TSPAN10 RAB40B OGFOD3 SLC38A10 TEX19 ZNF750 LOC101929552 SLC16A3 MIR6786 NOTUM MIR4525 FAAP100 ASPSCR1 UTS2R BAHCC1 CCDC137 PDE6G |
nsv470620 | Chr.17:81516973 - 82064485 on Build GRCh38 | Loss | MRPL12 PYCR1 ANAPC11 DUS1L DCXR P4HB HGS GPS1 RFNG PPP1R27 NPB STRA13 SIRT7 SLC25A10 MCRIP1 MAFG GCGR ARHGDIA MYADML2 LRRC45 MAFG-AS1 OXLD1 FSCN2 ALYREF TSPAN10 NPLOC4 PCYT2 ARL16 RAC3 MIR6786 NOTUM FAAP100 ASPSCR1 CCDC137 PDE6G |
dgv5800n54 | Chr.17:82013189 - 82035336 on Build GRCh38 | Loss | LRRC45 RAC3 ASPSCR1 STRA13 |
esv21913 | Chr.17:81828123 - 83103548 on Build GRCh38 | Gain+Loss | FN3KRP PYCR1 DUS1L DCXR P4HB PPP1R27 SIRT7 LOC101929511 MAFG SNORD134 FN3K CD7 LOC105376790 MIR6787 MAFG-AS1 ALYREF PCYT2 SECTM1 CSNK1D RAC3 TBCD LOC105376791 WDR45B LOC105371944 METRNL ANAPC11 GPS1 RFNG NPB STRA13 MCRIP1 NARF FOXK2 HEXDC ARHGDIA FASN B3GNTL1 MYADML2 LRRC45 CCDC57 C17orf62 RAB40B OGFOD3 TEX19 ZNF750 LOC101929552 SLC16A3 NOTUM MIR4525 ASPSCR1 UTS2R |
More Information
Additional Information:
For this assay, SNP(s) [rs72861729] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Non-exonic DGV Variation |