Assay Details
Target Gene Details
Entrez Gene ID: | 254531 |
Gene Name: | lysophosphatidylcholine acyltransferase 4 |
Gene Aliases: |
AGPAT7, AYTL3, LPAAT-eta, LPEAT2 |
Location: |
Chr.15:34358888-34367196 on Build GRCh38 |
Assay Gene Location: | Within Exon 16 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LPCAT4 | NM_153613.2 | 14 | 1741 | NP_705841.2 |
XM_011521422.1 | 14 | 1736 | XP_011519724.1 | |
AF007155.1 | 5 | 1224 | AAC19156.1 | |
AF529233.1 | 14 | 1590 | AAP97722.1 | |
AF542964.1 | 14 | 1824 | AAN33178.1 | |
AK290273.1 | 14 | 1712 | ||
AL832237.1 | 14 | 1738 | ||
AY734233.1 | 14 | 1761 | AAU34184.1 | |
BC024892.2 | 7 | 900 | AAH24892.2 | |
BC092463.1 | 14 | 1738 | AAH92463.1 | |
T29943.1 | 1 | 143 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv517751 | Chr.15:34355367 - 34579095 on Build GRCh38 | Gain+Loss | GOLGA8B GOLGA8A MIR1233-2 LPCAT4 MIR1233-1 NUTM1 |
nsv471682 | Chr.15:34268250 - 34590429 on Build GRCh38 | Gain+Loss | GOLGA8B GOLGA8A MIR1233-2 LPCAT4 MIR1233-1 SLC12A6 NOP10 NUTM1 |
nsv1052620 | Chr.15:32612402 - 34538731 on Build GRCh38 | Gain | SCG5 GOLGA8B GOLGA8A MIR1233-2 KATNBL1 FMN1 LPCAT4 PGBD4 LOC100131315 SLC12A6 GREM1 RYR3 NOP10 EMC4 LOC101928042 AVEN LOC105370757 LOC101928134 ARHGAP11A CHRM5 MIR1233-1 TMCO5B EMC7 NUTM1 |
esv33337 | Chr.15:31689863 - 34575097 on Build GRCh38 | Gain+Loss | MIR1233-2 LPCAT4 LOC100996255 LOC100131315 NOP10 LOC100653133 ARHGAP11A GOLGA8K CHRM5 ULK4P1 TMCO5B WHAMMP1 SCG5 GOLGA8B GOLGA8A KATNBL1 FMN1 PGBD4 SLC12A6 GREM1 RYR3 EMC4 LOC101060588 LOC101928042 AVEN LOC105370757 LOC101928134 LOC105370940 CHRNA7 MIR1233-1 GOLGA8N GOLGA8O EMC7 NUTM1 |
nsv509567 | Chr.15:34345031 - 34396055 on Build GRCh38 | Insertion | GOLGA8A LPCAT4 MIR1233-1 NUTM1 |
nsv1485 | Chr.15:34354006 - 34601539 on Build GRCh38 | Deletion | GOLGA8B GOLGA8A MIR1233-2 LPCAT4 MIR1233-1 NUTM1 |
esv2760024 | Chr.15:34250820 - 34696046 on Build GRCh38 | Gain+Loss | GOLGA8B GOLGA8A MIR1233-2 LPCAT4 MIR1233-1 SLC12A6 NOP10 NUTM1 |
esv3569431 | Chr.15:33564570 - 35080307 on Build GRCh38 | Gain | GOLGA8B GOLGA8A MIR1233-2 KATNBL1 LPCAT4 PGBD4 SLC12A6 RYR3 NOP10 ZNF770 EMC4 ACTC1 AVEN CHRM5 MIR1233-1 AQR GJD2 LOC101928174 EMC7 NUTM1 |
nsv469547 | Chr.15:34302356 - 34465606 on Build GRCh38 | Loss | GOLGA8A LPCAT4 MIR1233-1 SLC12A6 NOP10 NUTM1 |
dgv4456n54 | Chr.15:32604149 - 34557061 on Build GRCh38 | Gain | MIR1233-2 LPCAT4 LOC100131315 NOP10 ARHGAP11A CHRM5 TMCO5B SCG5 GOLGA8B GOLGA8A KATNBL1 FMN1 PGBD4 SLC12A6 GREM1 RYR3 EMC4 LOC101928042 AVEN LOC105370757 LOC101928134 MIR1233-1 GOLGA8N EMC7 NUTM1 |
More Information
Additional Information:
For this assay, SNP(s) [rs201560543] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |