Assay Details
Target Gene Details
Entrez Gene ID: | 150572 |
Gene Name: | SET and MYND domain containing 1 |
Gene Aliases: |
BOP, KMT3D, ZMYND18, ZMYND22 |
Location: |
Chr.2:88067780-88113384 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 3 - Exon 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SMYD1 | NM_198274.3 | NP_938015.1 | ||
XM_005264156.2 | XP_005264213.1 | |||
AK091724.1 | BAC03732.1 | |||
AL832035.1 | CAI46139.1 | |||
AY518933.1 | AAT44535.1 | |||
BC126191.1 | ||||
BX647878.1 | CAI46077.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv61n16 | Chr.2:87343737 - 90254660 on Build GRCh38 | Deletion | ANKRD36BP2 FOXI3 IGK IGKV1D-13 RGPD2 IGKV3D-15 MIR4435-1 MIR4436A LOC101927050 LOC101928371 FABP1 LOC101928403 TEX37 RPIA SMYD1 IGKV3-20 IGKC THNSL2 LINC00152 IGKV1D-8 KRCC1 IGKV2-29 LOC730268 IGKV1-5 LOC107985911 IGKV2-24 MIR4780 EIF2AK3 IGKV2-26 PLGLB2 |
dgv6947n54 | Chr.2:87815738 - 88850700 on Build GRCh38 | Gain | RPIA SMYD1 ANKRD36BP2 FOXI3 THNSL2 RGPD2 KRCC1 MIR4436A LOC101928371 FABP1 MIR4780 LOC101928403 TEX37 EIF2AK3 |
nsv1072005 | Chr.2:87360367 - 90256528 on Build GRCh38 | Deletion | ANKRD36BP2 FOXI3 IGK IGKV1D-13 RGPD2 IGKV3D-15 MIR4435-1 MIR4436A LOC101927050 LOC101928371 FABP1 LOC101928403 TEX37 RPIA SMYD1 IGKV3-20 IGKC THNSL2 LINC00152 IGKV1D-8 KRCC1 IGKV2-29 LOC730268 IGKV1-5 LOC107985911 IGKV2-24 MIR4780 EIF2AK3 IGKV2-26 PLGLB2 |
nsv834289 | Chr.2:88083076 - 88251327 on Build GRCh38 | Gain | SMYD1 THNSL2 FABP1 |
nsv1130752 | Chr.2:87360364 - 90256525 on Build GRCh38 | Deletion | ANKRD36BP2 FOXI3 IGK IGKV1D-13 RGPD2 IGKV3D-15 MIR4435-1 MIR4436A LOC101927050 LOC101928371 FABP1 LOC101928403 TEX37 RPIA SMYD1 IGKV3-20 IGKC THNSL2 LINC00152 IGKV1D-8 KRCC1 IGKV2-29 LOC730268 IGKV1-5 LOC107985911 IGKV2-24 MIR4780 EIF2AK3 IGKV2-26 PLGLB2 |
nsv582384 | Chr.2:87987149 - 88773214 on Build GRCh38 | Loss | RPIA SMYD1 ANKRD36BP2 FOXI3 THNSL2 RGPD2 KRCC1 LOC101928371 FABP1 MIR4780 LOC101928403 TEX37 EIF2AK3 |
nsv582386 | Chr.2:88035188 - 89208087 on Build GRCh38 | Loss | RPIA SMYD1 IGKV3-20 IGKC ANKRD36BP2 FOXI3 IGK THNSL2 KRCC1 MIR4436A IGKV1-5 LOC101928371 FABP1 IGKV2-24 MIR4780 LOC101928403 TEX37 EIF2AK3 IGKV2-26 |
nsv582383 | Chr.2:87915816 - 88527080 on Build GRCh38 | Gain | SMYD1 FOXI3 THNSL2 FABP1 RGPD2 MIR4780 KRCC1 TEX37 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |