Assay Details
Target Gene Details
Entrez Gene ID: | 5252 |
Gene Name: | PHD finger protein 1 |
Gene Aliases: |
MTF2L2, PCL1, PHF2, TDRD19C, hPHF1 |
Location: |
Chr.6:33410751-33416453 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 5 - Intron 5 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PHF1 | NM_002636.4 | NP_002627.1 | ||
NM_024165.2 | NP_077084.1 | |||
NR_027692.1 | ||||
XM_011514662.1 | XP_011512964.1 | |||
XM_011514663.1 | XP_011512965.1 | |||
XM_011514664.1 | XP_011512966.1 | |||
XM_011514665.1 | XP_011512967.1 | |||
XM_011514666.1 | XP_011512968.1 | |||
XM_011514669.1 | XP_011512971.1 | |||
XM_011514670.2 | XP_011512972.1 | |||
XM_017010939.1 | XP_016866428.1 | |||
AF029678.1 | AAC52062.1 | |||
AF052205.1 | AAC13273.1 | |||
AK225913.1 | ||||
AK295412.1 | ||||
AK299162.1 | ||||
AK316499.1 | ||||
BC008834.2 | AAH08834.1 | |||
DA065298.1 | ||||
DA872118.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv830637 | Chr.6:33361588 - 33542927 on Build GRCh38 | Loss | ZBTB9 MIR5004 SYNGAP1 CUTA KIFC1 PHF1 |
nsv830635 | Chr.6:33270228 - 33446010 on Build GRCh38 | Loss | MIR6834 ZBTB22 TAPBP SYNGAP1 CUTA RGL2 KIFC1 WDR46 PHF1 B3GALT4 MIR5004 PFDN6 VPS52 MIR6873 RPS18 DAXX |
nsv1073969 | Chr.6:31456422 - 33480523 on Build GRCh38 | Deletion | CYP21A1P LOC100294145 PBX2 HLA-DOA LY6G6F RXRB DDAH2 SNORA38 FKBPL PHF1 DXO SNORD48 AGPAT1 HLA-DRB6 SNORD117 MCCD1 MIR6873 PRRC2A DAXX COL11A2 SLC39A7 MIR219A1 NOTCH4 MICB LOC102725068 GPSM3 HSPA1L C6orf48 SYNGAP1 DDX39B AIF1 STK19 ABHD16A HLA-DQB1 WDR46 ATP6V1G2-DDX39B C6orf47 LTA HCG23 HSD17B8 SNORD84 LY6G5C APOM HLA-DQA2 RNF5 PSMB8 EHMT2 NELFE GPANK1 AGER HLA-DQB1-AS1 LY6G6C HLA-DRB1 LY6G6E LOC101929163 HLA-DRA B3GALT4 VPS52 HLA-DMA C4B HCG25 DDX39B-AS1 MIR6834 LY6G6D HCG24 ZBTB22 MIR6832 TNF RGL2 HLA-DQB2 BAG6 SLC44A4 LY6G5B MIR5004 MSH5-SAPCD1 LTB HSPA1B ATP6V1G2 MIR6721 MIR4646 C2-AS1 TAPBP HLA-DPB2 PSMB8-AS1 C2 LOC100507547 RING1 BTNL2 C4A TAP2 VARS CLIC1 MIR6833 SAPCD1 LSM2 CUTA HLA-DRB5 KIFC1 HCG26 NCR3 NFKBIL1 NEU1 C6orf25 C6orf10 PSMB9 HLA-DPA1 TNXA CFB CSNK2B SAPCD1-AS1 MSH5 ZBTB9 CYP21A2 ATF6B PPT2-EGFL8 ZBTB12 MIR3135B LOC100287329 PRRT1 HLA-DMB HLA-DPB1 PFDN6 VWA7 HLA-DOB HCP5 RPS18 SNORD52 MIR1236 EGFL8 PPT2 BRD2 LST1 PPP1R2P1 HSPA1A SKIV2L TNXB TAP1 HLA-DQA1 |
nsv1112900 | Chr.6:31455323 - 33480423 on Build GRCh38 | Deletion | CYP21A1P LOC100294145 PBX2 HLA-DOA LY6G6F RXRB DDAH2 SNORA38 FKBPL PHF1 DXO SNORD48 AGPAT1 HLA-DRB6 SNORD117 MCCD1 MIR6873 PRRC2A DAXX COL11A2 SLC39A7 MIR219A1 NOTCH4 MICB LOC102725068 GPSM3 HSPA1L C6orf48 SYNGAP1 DDX39B AIF1 STK19 ABHD16A HLA-DQB1 WDR46 ATP6V1G2-DDX39B C6orf47 LTA HCG23 HSD17B8 SNORD84 LY6G5C APOM HLA-DQA2 RNF5 PSMB8 EHMT2 NELFE GPANK1 AGER HLA-DQB1-AS1 LY6G6C HLA-DRB1 LY6G6E LOC101929163 HLA-DRA B3GALT4 VPS52 HLA-DMA C4B HCG25 DDX39B-AS1 MIR6834 LY6G6D HCG24 ZBTB22 MIR6832 TNF RGL2 HLA-DQB2 BAG6 SLC44A4 LY6G5B MIR5004 MSH5-SAPCD1 LTB HSPA1B ATP6V1G2 MIR6721 MIR4646 C2-AS1 TAPBP HLA-DPB2 PSMB8-AS1 C2 LOC100507547 RING1 BTNL2 C4A TAP2 VARS CLIC1 MIR6833 SAPCD1 LSM2 CUTA HLA-DRB5 KIFC1 HCG26 NCR3 NFKBIL1 NEU1 C6orf25 C6orf10 PSMB9 HLA-DPA1 TNXA CFB CSNK2B SAPCD1-AS1 MSH5 ZBTB9 CYP21A2 ATF6B PPT2-EGFL8 ZBTB12 MIR3135B LOC100287329 PRRT1 HLA-DMB HLA-DPB1 PFDN6 VWA7 HLA-DOB HCP5 RPS18 SNORD52 MIR1236 EGFL8 PPT2 BRD2 LST1 PPP1R2P1 HSPA1A SKIV2L TNXB TAP1 HLA-DQA1 |
nsv1119076 | Chr.6:32595823 - 33480623 on Build GRCh38 | Deletion | LOC100294145 ZBTB9 HLA-DQB1-AS1 TAPBP HLA-DPB2 MIR3135B PSMB8-AS1 HLA-DOA RXRB PHF1 HLA-DMB B3GALT4 HLA-DPB1 PFDN6 VPS52 RING1 HLA-DOB MIR6873 HLA-DMA HCG25 TAP2 RPS18 DAXX COL11A2 SLC39A7 MIR6834 MIR219A1 HCG24 ZBTB22 SYNGAP1 CUTA RGL2 KIFC1 HLA-DQB2 HLA-DQB1 WDR46 HSD17B8 BRD2 MIR5004 PPP1R2P1 PSMB9 HLA-DPA1 HLA-DQA2 TAP1 PSMB8 HLA-DQA1 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |