Assay Details
Target Gene Details
Entrez Gene ID: | 59307 |
Gene Name: | single Ig and TIR domain containing |
Gene Aliases: |
IL-1R8, TIR8 |
Location: |
Chr.11:405716-417454 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 4 - Exon 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SIGIRR | NM_001135053.1 | NP_001128525.1 | ||
NM_001135054.1 | NP_001128526.1 | |||
NM_021805.2 | NP_068577.2 | |||
XM_005253044.2 | XP_005253101.1 | |||
XM_005253045.1 | XP_005253102.1 | |||
XM_005253046.1 | XP_005253103.1 | |||
XM_005253048.4 | XP_005253105.1 | |||
XM_017018099.1 | XP_016873588.1 | |||
XM_017018100.1 | XP_016873589.1 | |||
AK025099.1 | BAB15066.1 | |||
AK093427.1 | ||||
AK172830.1 | BAD18795.1 | |||
AY358342.1 | AAQ88708.1 | |||
BC003591.1 | AAH03591.1 | |||
BC025953.1 | AAH25953.1 | |||
BC106007.1 | AAI06008.1 | |||
CR457338.1 | CAG33619.1 | |||
DA963481.1 | ||||
DB112269.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv527327 | Chr.11:295343 - 620599 on Build GRCh38 | Loss | IFITM5 PGGHG IRF7 PKP3 B4GALNT4 IFITM2 MIR210 IFITM1 LOC143666 PHRF1 LOC101059906 MIR210HG LRRC56 IFITM3 LMNTD2 HRAS PTDSS2 RASSF7 ANO9 RNH1 SIGIRR CDHR5 |
nsv469923 | Chr.11:378188 - 1302334 on Build GRCh38 | Loss | MIR6744 IRF7 DRD4 PKP3 B4GALNT4 LOC171391 CRACR2B MIR210HG CEND1 TOLLIP MUC5AC PNPLA2 HRAS LOC101927503 RPLP2 POLR2L PTDSS2 ANO9 PANO1 SNORA52 SIGIRR TSPAN4 CDHR5 PIDD1 TALDO1 DEAF1 MUC5B SLC25A22 AP2A2 EPS8L2 MIR210 LOC143666 CHID1 PHRF1 LOC101059906 PDDC1 LRRC56 TMEM80 MUC2 LMNTD2 RASSF7 SCT RNH1 MUC6 CD151 |
nsv552776 | Chr.11:366710 - 432436 on Build GRCh38 | Loss | ANO9 PKP3 B4GALNT4 SIGIRR |
nsv951268 | Chr.11:368601 - 503700 on Build GRCh38 | Deletion | PTDSS2 ANO9 PKP3 B4GALNT4 RNH1 SIGIRR |
nsv552770 | Chr.11:356090 - 444628 on Build GRCh38 | Gain | ANO9 PKP3 B4GALNT4 SIGIRR |
dgv1505n54 | Chr.11:198510 - 470331 on Build GRCh38 | Gain | IFITM5 PGGHG PKP3 B4GALNT4 IFITM2 MIR6743 IFITM1 ODF3 BET1L SIRT3 IFITM3 PTDSS2 ANO9 PSMD13 RIC8A SIGIRR NLRP6 |
nsv1159790 | Chr.11:340219 - 491334 on Build GRCh38 | Deletion | PTDSS2 ANO9 PKP3 B4GALNT4 SIGIRR |
dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion | IRF7 DRD4 PKP3 B4GALNT4 LOC171391 CRACR2B MIR210HG CEND1 PNPLA2 HRAS RPLP2 POLR2L PTDSS2 ANO9 PANO1 SNORA52 SIGIRR TSPAN4 CDHR5 PIDD1 TALDO1 DEAF1 SLC25A22 AP2A2 EPS8L2 MIR210 LOC143666 CHID1 PHRF1 LOC101059906 PDDC1 LRRC56 TMEM80 LMNTD2 RASSF7 SCT RNH1 CD151 |
More Information
Additional Information:
For this assay, SNP(s) [rs113922210] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |