Assay Details
Target Gene Details
Entrez Gene ID: | 58191 |
Gene Name: | C-X-C motif chemokine ligand 16 |
Gene Aliases: |
CXCLG16, SR-PSOX, SRPSOX |
Location: |
Chr.17:4733529-4739928 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 2 - Exon 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CXCL16 | NM_001100812.1 | NP_001094282.1 | ||
NM_022059.3 | NP_071342.2 | |||
AF275260.1 | AAG31750.1 | |||
AF301016.1 | AAG34365.1 | |||
AF337812.1 | AAK38275.1 | |||
AK027389.1 | BAB55078.1 | |||
AK292114.1 | ||||
AK315017.1 | ||||
AY358909.1 | AAQ89268.1 | |||
BC017588.1 | AAH17588.1 | |||
BC044930.1 | AAH44930.1 | |||
CA307348.1 | ||||
JC209418.1 | ||||
JC209420.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv574273 | Chr.17:4585589 - 5460332 on Build GRCh38 | Gain | ZFP3 CAMTA2 MIR6864 SMTNL2 PLD2 USP6 C17orf107 LOC102724009 LOC101927979 SLC25A11 ALOX15 ZMYND15 SLC52A1 GLTPD2 PFN1 NUP88 LOC100130950 MED11 RNF167 ARRB2 ZNF594 PELP1 RABEP1 RPAIN TM4SF5 LOC101559451 LOC107984973 MIR6865 INCA1 ZNF232 SPAG7 CHRNE CXCL16 PSMB6 LOC400568 VMO1 ENO3 C1QBP DHX33 LOC101928000 MINK1 SCIMP GP1BA KIF1C |
nsv833346 | Chr.17:4646256 - 4860871 on Build GRCh38 | Loss | LOC101559451 LOC107984973 PLD2 ZMYND15 CXCL16 PSMB6 VMO1 GLTPD2 MINK1 MED11 ARRB2 PELP1 TM4SF5 |
nsv1952 | Chr.17:4726245 - 4748889 on Build GRCh38 | Insertion | MED11 ZMYND15 CXCL16 |
More Information
Additional Information:
For this assay, SNP(s) [rs201449487] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Non-exonic DGV Variation |