Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 11 - Intron 12 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
BG189223.1 | ||||
BQ446114.1 | ||||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | TFPT TARM1 OSCAR VSTM1 PRPF31 NDUFA3 |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | TARM1 CACNG8 VSTM1 CACNG6 MIR935 |
nsv1057516 | Chr.19:53986233 - 54046901 on Build GRCh38 | Gain | CACNG8 VSTM1 CACNG6 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | CACNG7 CACNG8 VSTM1 CACNG6 MIR935 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | CACNG8 MIR373 MIR521-1 TSEN34 LILRA6 VN1R4 TMC4 ZNF331 MIR518A1 LOC284379 ZNF818P MIR1323 MIR527 ZNF761 MIR4752 MIR524 DPRX LILRB5 MIR517A MIR512-2 MIR516B2 CNOT3 OSCAR MIR512-1 MIR519E MIR519D PRPF31 MIR519C LENG1 LOC105372457 RPS9 TPM3P9 MIR520H MIR518B LILRB3 BIRC8 MIR526B MIR520G MIR517B MIR519A1 NDUFA3 MIR520E ZNF665 MIR516A2 TARM1 MIR518F ZNF845 MIR520F LILRA5 MIR518C MIR526A2 MIR371A MBOAT7 MIR520A ZNF525 MIR371B ZNF765 MIR522 MIR519B MIR518A2 MIR520C MIR1283-1 VSTM1 MIR519A2 MIR1283-2 MIR372 MIR518E MIR520B TFPT PRKCG MIR525 MIR526A1 MIR520D ZNF813 ZNF677 MIR518D MYADM NLRP12 MIR935 CACNG7 VN1R2 LILRB2 MIR515-2 FAM90A27P MIR516A1 MIR516B1 MIR521-2 MIR523 MIR517C CACNG6 MIR498 MIR515-1 |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | TFPT TARM1 OSCAR CACNG8 VSTM1 CACNG6 PRPF31 NDUFA3 MIR935 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |