Assay Details
Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SCAF1 | NM_021228.2 | 7 | 844 | NP_067051.2 |
XM_005259122.4 | 7 | 1127 | XP_005259179.1 | |
XM_011527194.2 | 7 | 769 | XP_011525496.1 | |
XM_017027083.1 | 4 | 571 | XP_016882572.1 | |
AK024444.1 | 7 | 844 | ||
BC011662.2 | AAH11662.2 | |||
BC053992.1 | 6 | 731 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss | MIR5088 ADM5 NOSIP BCL2L12 SCAF1 PRRG2 IRF3 CPT1C RRAS PRR12 PRMT1 |
nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss | MIR5088 ADM5 NOSIP BCL2L12 SCAF1 PRRG2 IRF3 CPT1C RRAS PRR12 PRMT1 |
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | MIR4324 SNAR-A11 ZNF473 LOC100287477 TBC1D17 CPT1C RPS11 DBP RASIP1 SLC6A16 DKKL1 SNAR-A8 CGB5 MIR4749 NTF4 KCNA7 RCN3 SNAR-C1 SPACA4 MIR150 RUVBL2 FTL SNAR-A10 MIR5088 CCDC155 PLEKHA4 FAM83E MIR6799 SNAR-A13 BSPH1 SNAR-A6 SYNGR4 PIH1D1 MIR4751 LMTK3 NTN5 SNAR-A3 CD37 KDELR1 SNAR-A12 SNORD34 SNRNP70 ALDH16A1 LOC101059948 SNAR-C5 CABP5 CARD8 PRR12 FLT3LG ZNF114 GYS1 AP2A1 SNAR-A4 TSKS EMP3 MAMSTR HSD17B14 SNAR-A5 SNAR-C4 TEAD2 AKT1S1 SLC17A7 SNAR-D NUCB1-AS1 SNAR-A2 FGF21 MIR6800 SNAR-A1 PLA2G4C LOC105372430 GRWD1 CCDC114 PPP1R15A BCL2L12 LIN7B PRRG2 SNAR-A7 C19orf68 PTOV1-AS1 CGB2 SNAR-G1 SNAR-A9 ATF5 RPL18 VRK3 FUZ PTOV1-AS2 CA11 SPHK2 PLA2G4C-AS1 CARD8-AS1 FCGRT TRPM4 PTOV1 SNORD35B SNAR-G2 ELSPBP1 PPFIA3 CGB8 SNORD35A NUCB1 SCAF1 SNAR-B2 MIR6798 SULT2B1 PNKP CGB3 MED25 KCNJ14 SNAR-A14 FUT1 BAX NOSIP LIG1 C19orf73 DHDH SNAR-B1 PRMT1 GFY CYTH2 FUT2 TMEM143 CGB1 SIGLEC16 PTH2 SEC1P RRAS FLJ26850 CGB7 RPL13A HRC LOC105447645 IRF3 LHB MIR4750 GRIN2D BCAT2 NUP62 TULP2 IL4I1 LOC101928295 ADM5 SNAR-C2 SIGLEC11 IZUMO1 SNORD33 SNAR-C3 SNORD32A |
nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain | MIR5088 ADM5 BCL2L12 SCAF1 IRF3 CPT1C RRAS PRR12 PRMT1 |
nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss | SCAF1 IRF3 |
nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion | ATF5 NOSIP FUZ TBC1D17 CPT1C PTOV1-AS2 PRR12 PRMT1 AP2A1 MIR4749 TSKS PTOV1 RRAS AKT1S1 MIR5088 SCAF1 IRF3 MIR6799 MIR4750 NUP62 IL4I1 MIR6800 PNKP MIR4751 ADM5 BCL2L12 MED25 PRRG2 PTOV1-AS1 |
nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain | MIR5088 ADM5 NOSIP BCL2L12 SCAF1 PRRG2 IRF3 CPT1C RRAS PRR12 PRMT1 |
nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion | NOSIP FUZ CPT1C RPS11 PRR12 PRMT1 AP2A1 FCGRT TSKS SNORD35B RRAS RCN3 RPL13A MIR150 MIR5088 SNORD35A SCAF1 IRF3 MIR6799 MIR6800 ADM5 BCL2L12 MED25 PRRG2 PTOV1-AS1 SNORD33 SNORD32A SNORD34 |
nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss | NOSIP BCL2L12 SCAF1 PRRG2 IRF3 RRAS PRR12 PRMT1 |
nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss | SCAF1 IRF3 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |