Assay Details
Target Gene Details
Entrez Gene ID: | 84231 |
Gene Name: | TNF receptor associated factor 7 |
Gene Aliases: |
RFWD1, RNF119 |
Location: |
Chr.16:2155752-2178129 on Build GRCh38 |
Assay Gene Location: | Overlaps Exon 16 - Intron 16 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRAF7 | NM_032271.2 | NP_115647.2 | ||
XM_005255627.4 | XP_005255684.1 | |||
XM_011522700.1 | XP_011521002.1 | |||
AK090624.1 | ||||
AL136921.1 | CAB66855.1 | |||
AY569455.1 | AAS68363.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | LINC00254 ATP6V0C PTX4 LUC7L NARFL RPUSD1 MSRB1 CLCN7 HBZ FLJ42627 WFIKKN1 LOC101929280 MIR3677 MIR4717 PRR35 HAGHL ABCA3 PRSS27 DNASE1L2 MIR6859-4 RPL23AP5 PGP MIR6768 RHBDL1 NME3 UNKL PRR25 TSC2 LOC105371184 C16orf59 WASIR2 HBA2 SLC9A3R2 TPSAB1 RPS2 LOC105371047 LOC105371046 POLR3K LMF1-AS1 MIR1225 TRAF7 DECR2 LOC105371049 ECI1 LOC107984876 TMEM204 NTHL1 MEIOB TELO2 GNPTG AXIN1 MRPL28 GNG13 LOC100134368 MIR3180-5 MRPS34 TPSG1 SOX8 UBE2I CCDC154 LOC106660606 GFER TBL3 CASKIN1 MCRIP2 LOC105371038 PDIA2 MAPK8IP3 MIR3176 TPSD1 BRICD5 SSTR5 ABCA17P CHTF18 SPSB3 RAB40C FBXL16 NUBP2 NPRL3 IGFALS LOC100287175 SNHG9 SSTR5-AS1 CRAMP1 SNHG19 NDUFB10 HS3ST6 E4F1 BAIAP3 SNORA78 HBA1 NHLRC4 KCTD5 CCDC78 MSLN SNORA10 ARHGDIG HBQ1 JMJD8 IFT140 PIGQ PKD1 WDR90 TMEM8A CAPN15 MIR3178 C1QTNF8 MLST8 LMF1 CACNA1H RNF151 LOC652276 LINC00235 FAM173A MPG NME4 AMDHD2 TPSB2 MIR6767 NOXO1 FAHD1 PRSS29P WDR24 MIR940 MIR662 RAB11FIP3 LOC105371045 RHBDF1 NTN3 CEMP1 RPL3L TSR3 HN1L EME2 FAM234A RGS11 LOC729652 METRN RHOT2 RNPS1 ERVK13-1 NPW HBM MIR3177 PDPK1 SNRNP25 LOC107987233 C16orf91 MIR6511B1 MIR4516 METTL26 RAB26 SNORD60 HAGH MIR5587 DDX11L10 STUB1 ZNF598 CCNF SNORA64 TBC1D24 SYNGR3 |
nsv471072 | Chr.16:1971892 - 2317508 on Build GRCh38 | Loss | BRICD5 MIR1225 TRAF7 LOC105371049 ECI1 NOXO1 NTHL1 MIR940 SNHG19 E4F1 MIR3180-5 RNPS1 MIR3677 NPW MIR4717 ABCA3 DNASE1L2 PGP MIR6511B1 MIR4516 RAB26 PKD1 SNORD60 MLST8 TSC2 LOC106660606 GFER TBL3 CASKIN1 ZNF598 SLC9A3R2 SYNGR3 |
dgv4861n54 | Chr.16:2083900 - 2246850 on Build GRCh38 | Loss | BRICD5 DNASE1L2 MIR1225 TRAF7 LOC105371049 PGP ECI1 MIR6511B1 MIR4516 RAB26 PKD1 SNORD60 MLST8 TSC2 SNHG19 CASKIN1 E4F1 MIR3180-5 |
dgv4863n54 | Chr.16:2141733 - 2274302 on Build GRCh38 | Loss | MIR3677 BRICD5 DNASE1L2 TRAF7 PGP ECI1 RAB26 MIR940 SNORD60 MLST8 LOC106660606 SNHG19 CASKIN1 E4F1 RNPS1 |
nsv457349 | Chr.16:2055054 - 2200730 on Build GRCh38 | Loss | SNHG19 CASKIN1 MIR1225 TRAF7 LOC105371049 MIR6511B1 MIR4516 RAB26 PKD1 SNORD60 MIR3180-5 TSC2 |
dgv456n67 | Chr.16:2175295 - 2181915 on Build GRCh38 | Gain | CASKIN1 TRAF7 |
nsv457351 | Chr.16:2156590 - 2274302 on Build GRCh38 | Loss | MIR3677 LOC106660606 BRICD5 CASKIN1 DNASE1L2 TRAF7 PGP ECI1 E4F1 MIR940 MLST8 RNPS1 |
nsv1052260 | Chr.16:2074546 - 2629655 on Build GRCh38 | Gain | BRICD5 AMDHD2 ATP6V0C MIR1225 TRAF7 ABCA17P LOC105371049 MIR6767 ECI1 MIR940 SNHG19 NTN3 CEMP1 LOC729652 E4F1 MIR3180-5 RNPS1 MIR3677 MIR4717 ABCA3 DNASE1L2 PDPK1 PGP MIR6511B1 MIR4516 RAB26 PKD1 MIR6768 MIR3178 SNORD60 MLST8 TSC2 LOC106660606 C16orf59 CASKIN1 CCNF TBC1D24 LOC652276 |
nsv952902 | Chr.16:2143400 - 2339999 on Build GRCh38 | Deletion | MIR3677 MIR4717 BRICD5 ABCA3 DNASE1L2 TRAF7 PGP ECI1 RAB26 MIR940 SNORD60 MLST8 LOC106660606 SNHG19 CASKIN1 E4F1 RNPS1 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |