Assay Details
Target Gene Details
Entrez Gene ID: | 50614 |
Gene Name: | polypeptide N-acetylgalactosaminyltransferase 9 |
Gene Aliases: |
GALNAC-T9, GALNACT9 |
Location: |
Chr.12:132195829-132329364 on Build GRCh38 |
Assay Gene Location: | Within Exon 17 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GALNT9 | NM_001122636.1 | 11 | 2478 | NP_001116108.1 |
NM_021808.3 | 7 | 1542 | NP_068580.2 | |
XM_017019371.1 | 10 | 2210 | XP_016874860.1 | |
XM_017019372.1 | 10 | 2170 | XP_016874861.1 | |
XM_017019373.1 | 11 | 2527 | XP_016874862.1 | |
XM_017019374.1 | 10 | 2147 | XP_016874863.1 | |
AF458594.1 | 7 | 1539 | AAM49722.1 | |
AK054820.1 | ||||
AK055773.1 | ||||
BM672467.1 | 1 | 203 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv3019n54 | Chr.12:132181784 - 132203592 on Build GRCh38 | Loss | GALNT9 |
nsv560966 | Chr.12:132194518 - 132483313 on Build GRCh38 | Gain | LOC101928416 LOC105370092 GALNT9 MUC8 LOC100130238 |
esv3631288 | Chr.12:132190709 - 132205907 on Build GRCh38 | Gain | GALNT9 |
esv3892285 | Chr.12:132154873 - 132201281 on Build GRCh38 | Gain | GALNT9 |
esv3580551 | Chr.12:132196503 - 132206310 on Build GRCh38 | Loss | GALNT9 |
nsv952512 | Chr.12:132192256 - 132711214 on Build GRCh38 | Deletion | GALNT9 POLE LRCOL1 PXMP2 FBRSL1 LOC100130238 PGAM5 LOC100996573 LOC101928416 LOC105370092 MUC8 MIR6763 P2RX2 |
nsv1041402 | Chr.12:132076412 - 132441297 on Build GRCh38 | Gain | EP400NL DDX51 LOC101928416 LOC105370092 GALNT9 NOC4L EP400 LOC100130238 |
nsv528119 | Chr.12:132174775 - 132218324 on Build GRCh38 | Loss | GALNT9 |
nsv826563 | Chr.12:132125383 - 132622340 on Build GRCh38 | Gain | GALNT9 LRCOL1 NOC4L FBRSL1 LOC100130238 LOC100996573 EP400NL DDX51 LOC101928416 LOC105370092 MUC8 MIR6763 P2RX2 |
dgv103n21 | Chr.12:132117051 - 132442096 on Build GRCh38 | Loss | EP400NL DDX51 LOC101928416 LOC105370092 GALNT9 NOC4L LOC100130238 |
nsv428285 | Chr.12:132065104 - 132208513 on Build GRCh38 | Gain | EP400NL DDX51 GALNT9 NOC4L EP400 |
More Information
Additional Information:
For this assay, SNP(s) [rs139836376] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |