Assay Details
Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SCAF1 | NM_021228.2 | 7 | 2648 | NP_067051.2 |
XM_005259122.4 | 7 | 2931 | XP_005259179.1 | |
XM_011527194.2 | 7 | 2573 | XP_011525496.1 | |
XM_017027083.1 | 4 | 2375 | XP_016882572.1 | |
AK024444.1 | 7 | 2648 | ||
BC011662.2 | AAH11662.2 | |||
BC018398.1 | 1 | 39 | AAH18398.1 | |
BC053992.1 | 6 | 2535 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss | ADM5 PRMT1 MIR5088 CPT1C RRAS IRF3 BCL2L12 PRR12 NOSIP PRRG2 SCAF1 |
nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss | ADM5 PRMT1 MIR5088 CPT1C RRAS IRF3 BCL2L12 PRR12 NOSIP PRRG2 SCAF1 |
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | SNAR-B1 ADM5 C19orf73 FAM83E SNORD33 PRMT1 MAMSTR CARD8 MIR150 LIG1 SNAR-C5 SIGLEC16 SNORD35A PTH2 FLJ26850 ZNF114 PTOV1-AS2 CGB2 RPL18 SNAR-A6 DKKL1 RPL13A RRAS SNAR-G2 CGB5 NUCB1 NTF4 GYS1 PPP1R15A CCDC114 SNORD32A RPS11 IRF3 SNAR-A1 PRR12 CD37 BCAT2 FCGRT FGF21 CGB8 CGB7 TULP2 SNAR-C2 SPHK2 FUZ CARD8-AS1 TBC1D17 CPT1C LMTK3 LOC105372430 PLA2G4C-AS1 TEAD2 SNAR-A3 SNAR-A13 LHB SNAR-A11 SNAR-C1 SNORD35B ELSPBP1 NOSIP FLT3LG SEC1P MIR4750 SPACA4 ZNF473 BAX HSD17B14 RUVBL2 MIR4324 SYNGR4 SNAR-A14 SNAR-A7 GRWD1 FTL CGB3 SNAR-A4 SNAR-A9 MED25 HRC BCL2L12 FUT1 DBP AP2A1 BSPH1 AKT1S1 SNAR-A2 PPFIA3 LOC101928295 SNAR-C3 RASIP1 TRPM4 SCAF1 RCN3 MIR6799 NUP62 LOC105447645 SNAR-A8 MIR4751 SNAR-A5 SNAR-G1 SNAR-A10 SLC6A16 PLEKHA4 SULT2B1 SIGLEC11 PTOV1-AS1 SLC17A7 C19orf68 CYTH2 IL4I1 CABP5 NTN5 LIN7B SNRNP70 CCDC155 MIR6798 SNORD34 LOC100287477 IZUMO1 GRIN2D FUT2 TSKS NUCB1-AS1 SNAR-A12 KCNA7 PLA2G4C PTOV1 SNAR-C4 SNAR-B2 MIR5088 PIH1D1 PNKP KCNJ14 ATF5 MIR4749 CA11 CGB1 KDELR1 EMP3 ALDH16A1 SNAR-D TMEM143 DHDH MIR6800 GFY PRRG2 VRK3 LOC101059948 |
nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain | ADM5 PRMT1 MIR5088 CPT1C RRAS IRF3 BCL2L12 PRR12 SCAF1 |
nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss | IRF3 SCAF1 |
nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion | AP2A1 PTOV1 AKT1S1 ADM5 FUZ TBC1D17 PRMT1 MIR5088 CPT1C PNKP SCAF1 MIR6799 NUP62 ATF5 MIR4751 MIR4749 PTOV1-AS2 NOSIP MIR4750 PTOV1-AS1 MIR6800 RRAS IL4I1 PRRG2 MED25 TSKS IRF3 BCL2L12 PRR12 |
nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain | ADM5 PRMT1 MIR5088 CPT1C RRAS IRF3 BCL2L12 PRR12 NOSIP PRRG2 SCAF1 |
nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion | AP2A1 ADM5 FUZ SNORD33 PRMT1 MIR5088 CPT1C MIR150 SCAF1 RCN3 SNORD35A MIR6799 SNORD35B NOSIP PTOV1-AS1 MIR6800 RPL13A RRAS PRRG2 SNORD32A SNORD34 MED25 RPS11 TSKS IRF3 BCL2L12 PRR12 FCGRT |
nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss | PRMT1 RRAS IRF3 BCL2L12 PRR12 NOSIP PRRG2 SCAF1 |
nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss | IRF3 SCAF1 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |