Hs00560376_cn

• Gene Symbol: SMYD1
• Assay Reference Genome Location: Chr.2:88091136 on build GRCh38
• Cytoband: 2p11.2

Target Gene Details

• Entrez Gene ID: 150572
• Gene Name: SET and MYND domain containing 1
• Gene Aliases: BOP, KMT3D, ZMYND18, ZMYND22
• Location: Chr.2:88067780-88113384 on Build GRCh38
• Assay Gene Location: Overlaps Exon 4 - Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SMYD1	NM_198274.3			NP_938015.1
	XM_005264156.2			XP_005264213.1
	AK091724.1			BAC03732.1
	AL832035.1			CAI46139.1
	AY518933.1			AAT44535.1
	AY518934.1			AAT44536.1
	BC126191.1
	BX647878.1			CAI46077.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv61n16	Chr.2:87343737 - 90254660 on Build GRCh38	Deletion	THNSL2 LOC101928371 LOC101927050 IGKV2-24 MIR4436A IGKV1-5 PLGLB2 LOC101928403 RGPD2 SMYD1 LOC107985911 ANKRD36BP2 EIF2AK3 IGKV1D-13 TEX37 IGK MIR4435-1 IGKV3-20 IGKV1D-8 MIR4780 IGKV2-26 LOC730268 FOXI3 KRCC1 RPIA LINC00152 IGKC IGKV2-29 IGKV3D-15 FABP1
dgv6947n54	Chr.2:87815738 - 88850700 on Build GRCh38	Gain	THNSL2 LOC101928371 MIR4780 MIR4436A FOXI3 KRCC1 RPIA LOC101928403 RGPD2 SMYD1 ANKRD36BP2 EIF2AK3 TEX37 FABP1
nsv1072005	Chr.2:87360367 - 90256528 on Build GRCh38	Deletion	THNSL2 LOC101928371 LOC101927050 IGKV2-24 MIR4436A IGKV1-5 PLGLB2 LOC101928403 RGPD2 SMYD1 LOC107985911 ANKRD36BP2 EIF2AK3 IGKV1D-13 TEX37 IGK MIR4435-1 IGKV3-20 IGKV1D-8 MIR4780 IGKV2-26 LOC730268 FOXI3 KRCC1 RPIA LINC00152 IGKC IGKV2-29 IGKV3D-15 FABP1
nsv834289	Chr.2:88083076 - 88251327 on Build GRCh38	Gain	THNSL2 SMYD1 FABP1
nsv1130752	Chr.2:87360364 - 90256525 on Build GRCh38	Deletion	THNSL2 LOC101928371 LOC101927050 IGKV2-24 MIR4436A IGKV1-5 PLGLB2 LOC101928403 RGPD2 SMYD1 LOC107985911 ANKRD36BP2 EIF2AK3 IGKV1D-13 TEX37 IGK MIR4435-1 IGKV3-20 IGKV1D-8 MIR4780 IGKV2-26 LOC730268 FOXI3 KRCC1 RPIA LINC00152 IGKC IGKV2-29 IGKV3D-15 FABP1
nsv582384	Chr.2:87987149 - 88773214 on Build GRCh38	Loss	THNSL2 LOC101928371 MIR4780 FOXI3 KRCC1 RPIA LOC101928403 RGPD2 SMYD1 ANKRD36BP2 EIF2AK3 TEX37 FABP1
nsv582386	Chr.2:88035188 - 89208087 on Build GRCh38	Loss	THNSL2 LOC101928371 MIR4780 IGKV2-26 IGKV2-24 MIR4436A IGKV1-5 FOXI3 KRCC1 RPIA LOC101928403 IGKC SMYD1 ANKRD36BP2 EIF2AK3 TEX37 IGK IGKV3-20 FABP1
nsv582383	Chr.2:87915816 - 88527080 on Build GRCh38	Gain	RGPD2 THNSL2 MIR4780 SMYD1 TEX37 FOXI3 KRCC1 FABP1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

histone modifying enzyme

Gene Ontology Categories:

Process(es)

chromatin remodeling
transcription, DNA-templated
heart development
positive regulation of myotube differentiation
histone lysine methylation
skeletal muscle cell differentiation
positive regulation of myoblast differentiation
negative regulation of transcription, DNA-templated

Function(s)

DNA binding
transcription corepressor activity
protein binding
histone-lysine N-methyltransferase activity
metal ion binding