Assay Details
Target Gene Details
Entrez Gene ID: | 7082 |
Gene Name: | tight junction protein 1 |
Gene Aliases: |
ZO-1 |
Location: |
Chr.15:29699367-29968919 on Build GRCh38 |
Assay Gene Location: | Within Exon 33 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TJP1 | NM_001301025.1 | 29 | 6317 | NP_001287954.1 |
NM_001301026.1 | 28 | 6092 | NP_001287955.1 | |
NM_003257.4 | 28 | 6493 | NP_003248.3 | |
NM_175610.3 | 27 | 6253 | NP_783297.2 | |
XM_005254617.3 | 29 | 6377 | XP_005254674.2 | |
XM_005254618.3 | 28 | 6184 | XP_005254675.1 | |
XM_005254619.3 | 28 | 6197 | XP_005254676.2 | |
XM_005254620.3 | 28 | 6137 | XP_005254677.2 | |
XM_011521972.2 | 29 | 6398 | XP_011520274.2 | |
XM_017022521.1 | 30 | 6488 | XP_016878010.1 | |
XM_017022522.1 | 30 | 6449 | XP_016878011.1 | |
XM_017022523.1 | 30 | 6428 | XP_016878012.1 | |
XM_017022524.1 | 29 | 6248 | XP_016878013.1 | |
XM_017022525.1 | 29 | 6250 | XP_016878014.1 | |
XM_017022526.1 | 29 | 6235 | XP_016878015.1 | |
XM_017022527.1 | 29 | 6276 | XP_016878016.1 | |
XM_017022528.1 | 28 | 6160 | XP_016878017.1 | |
XM_017022529.1 | 28 | 6145 | XP_016878018.1 | |
XM_017022530.1 | 27 | 5944 | XP_016878019.1 | |
XM_017022531.1 | 30 | 6318 | XP_016878020.1 | |
AB370197.1 | 27 | 6057 | ||
AF035298.1 | 1 | 182 | ||
BX640879.1 | 28 | 6093 | CAE45936.1 | |
CR749235.1 | 20 | 4846 | CAH18091.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1040778 | Chr.15:28689598 - 30515727 on Build GRCh38 | Loss | LOC107984752 LOC105370746 LOC100130111 GOLGA8M NSMCE3 GOLGA8T DKFZP434L187 PDCD6IPP2 CHRFAM7A ULK4P3 APBA2 GOLGA8J GOLGA6L7P GOLGA8R FAM189A1 WHAMMP2 TJP1 LOC101060569 LOC100289656 LOC105370751 |
nsv832945 | Chr.15:29640395 - 29831518 on Build GRCh38 | Gain | LOC100130111 TJP1 |
nsv527255 | Chr.15:28754022 - 30074044 on Build GRCh38 | Gain | LOC107984752 LOC100130111 GOLGA6L7P FAM189A1 WHAMMP2 TJP1 LOC100289656 NSMCE3 PDCD6IPP2 APBA2 |
esv2751526 | Chr.15:28724519 - 30687025 on Build GRCh38 | Loss | LOC107984752 ARHGAP11B LOC100130111 NSMCE3 GOLGA8T DKFZP434L187 PDCD6IPP2 GOLGA8H ULK4P3 APBA2 GOLGA8J FAM189A1 WHAMMP2 LOC101060569 LOC100289656 LOC105370751 LOC100996413 LOC105370746 CHRFAM7A LOC100288637 ULK4P2 GOLGA6L7P LOC101927579 GOLGA8R TJP1 |
nsv1039798 | Chr.15:28724126 - 30158154 on Build GRCh38 | Gain | LOC107984752 LOC100130111 NSMCE3 GOLGA8T PDCD6IPP2 ULK4P3 APBA2 GOLGA8J GOLGA6L7P FAM189A1 WHAMMP2 TJP1 LOC100289656 |
nsv568675 | Chr.15:29035149 - 29916451 on Build GRCh38 | Gain | LOC100130111 FAM189A1 TJP1 NSMCE3 APBA2 |
nsv832944 | Chr.15:29568858 - 29789854 on Build GRCh38 | Gain+Loss | LOC100130111 FAM189A1 TJP1 |
More Information
Additional Information:
For this assay, SNP(s) [rs76088140] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |