Hs00520867_cn

• Gene Symbol: SECISBP2
• Assay Reference Genome Location: Chr.9:89319778 on build GRCh38
• Cytoband: 9q22.2

Target Gene Details

• Entrez Gene ID: 79048
• Gene Name: SECIS binding protein 2
• Gene Aliases: SBP2
• Location: Chr.9:89318473-89367117 on Build GRCh38
• Assay Gene Location: Overlaps Exon 3 - Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SECISBP2	NM_001282688.1			NP_001269617.1
	NM_001282689.1			NP_001269618.1
	NM_001282690.1			NP_001269619.1
	NM_024077.4			NP_076982.3
	XM_005252196.2			XP_005252253.1
	XM_006717282.2			XP_006717345.1
	XM_011519000.2			XP_011517302.1
	XM_011519001.1			XP_011517303.1
	XM_011519002.1			XP_011517304.1
	XM_011519003.1			XP_011517305.1
	XM_017015122.1			XP_016870611.1
	XM_017015123.1			XP_016870612.1
	XM_017015124.1			XP_016870613.1
	AB208940.1			BAD92177.1
	AF380995.1			AAK57518.1
	AK090608.1
	AK290182.1
	AK299161.1
	AK302852.1
	AL136881.1			CAB66815.1
	BC001189.1			AAH01189.1
	BC036109.1			AAH36109.1
	BC099900.1
	BP219148.1
	DR002073.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv831651	Chr.9:89103331 - 89319976 on Build GRCh38	Gain	SECISBP2 MIR3153 CKS2 SHC3
esv3621014	Chr.9:88877891 - 89641453 on Build GRCh38	Gain	UNQ6494 SECISBP2 SEMA4D GADD45G C9orf47 MIR3153 S1PR3 CKS2 SHC3
nsv1041327	Chr.9:89298100 - 89438209 on Build GRCh38	Gain	SECISBP2 SEMA4D MIR3153 CKS2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

selenocysteine incorporation
striatum development
neuron development
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Function(s)

mRNA 3'-UTR binding
protein binding
selenocysteine insertion sequence binding
ribonucleoprotein complex binding
poly(A) RNA binding