Assay Details
Target Gene Details
Entrez Gene ID: | 79680 |
Gene Name: | chromosome 22 open reading frame 29 |
Gene Aliases: |
BOP |
Location: |
Chr.22:19846138-19854848 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
C22orf29 | NM_024627.5 | 3 | 3521 | NP_078903.3 |
BX640785.1 | 2 | 3610 | CAE45875.1 | |
BX640969.1 | 3 | 3490 | CAE45984.1 | |
BX640998.1 | 3 | 3490 | CAE46001.1 |
Target Gene Details
Entrez Gene ID: | 54584 |
Gene Name: | G protein subunit beta 1 like |
Gene Aliases: |
DGCRK3, FKSG1, GY2, WDR14, WDVCF |
Location: |
Chr.22:19788411-19854939 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
GNB1L | NM_053004.2 | NP_443730.1 | ||
AB051432.1 | ||||
AF238328.1 | AAG36826.1 | |||
AF301895.1 | AAG53933.1 | |||
AY007378.1 | AAG12162.1 | |||
BC012060.1 | AAH12060.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv828949 | Chr.22:19849159 - 19849738 on Build GRCh38 | Gain | GNB1L C22orf29 |
nsv834129 | Chr.22:19705617 - 19919068 on Build GRCh38 | Loss | TXNRD2 GNB1L SEPT5-GP1BB TBX1 GP1BB C22orf29 SEPT5 |
nsv953024 | Chr.22:19842078 - 19854877 on Build GRCh38 | Deletion | GNB1L C22orf29 |
esv3893434 | Chr.22:19470889 - 20343372 on Build GRCh38 | Gain | GNB1L GP1BB CDC45 TANGO2 RTN4R DGCR6L C22orf29 SEPT5 LOC101927859 CCDC188 TXNRD2 MIR4761 MIR1306 UFD1L LINC00896 RANBP1 MIR185 ZDHHC8 MIR6816 SEPT5-GP1BB TBX1 LINC00895 CLDN5 LOC284865 MIR3618 LOC440792 DGCR8 ARVCF MIR1286 COMT TRMT2A |
nsv828939 | Chr.22:19696032 - 20324465 on Build GRCh38 | Loss | GNB1L GP1BB TANGO2 RTN4R DGCR6L C22orf29 SEPT5 CCDC188 TXNRD2 MIR4761 MIR1306 LINC00896 RANBP1 MIR185 ZDHHC8 MIR6816 SEPT5-GP1BB TBX1 LOC284865 MIR3618 LOC440792 DGCR8 ARVCF MIR1286 COMT TRMT2A |
nsv828938 | Chr.22:19691069 - 20324465 on Build GRCh38 | Gain | GNB1L GP1BB TANGO2 RTN4R DGCR6L C22orf29 SEPT5 CCDC188 TXNRD2 MIR4761 MIR1306 LINC00896 RANBP1 MIR185 ZDHHC8 MIR6816 SEPT5-GP1BB TBX1 LOC284865 MIR3618 LOC440792 DGCR8 ARVCF MIR1286 COMT TRMT2A |
nsv834130 | Chr.22:19837923 - 19940567 on Build GRCh38 | Loss | TXNRD2 GNB1L C22orf29 |
esv3568260 | Chr.22:19777375 - 19881883 on Build GRCh38 | Loss | TXNRD2 GNB1L TBX1 C22orf29 |
esv3647279 | Chr.22:19719848 - 19878980 on Build GRCh38 | Gain | TXNRD2 GNB1L SEPT5-GP1BB TBX1 GP1BB C22orf29 SEPT5 |
dgv7983n54 | Chr.22:19762002 - 20321870 on Build GRCh38 | Gain | MIR185 GNB1L ZDHHC8 MIR6816 TBX1 LOC284865 TANGO2 MIR3618 RTN4R LOC440792 DGCR6L C22orf29 CCDC188 TXNRD2 DGCR8 MIR4761 ARVCF MIR1306 MIR1286 COMT TRMT2A LINC00896 RANBP1 |
esv3575418 | Chr.22:18161776 - 19963846 on Build GRCh38 | Gain | GNB1L LOC100996415 DGCR5 GP1BB CDC45 C22orf29 PRODH SEPT5 TXNRD2 DGCR6 MIR4761 LINC01311 LOC729461 SLC25A1 LOC100996401 GSC2 DGCR10 UFD1L LOC102725072 LOC642643 LOC100996432 FAM230A DGCR2 MRPL40 SEPT5-GP1BB TBX1 GGT3P LINC00895 DGCR9 CLDN5 TSSK2 TMEM191B C22orf39 CLTCL1 DGCR11 HIRA PI4KAP1 DGCR14 USP18 RIMBP3 COMT |
More Information
Additional Information:
For this assay, SNP(s) [rs68172222] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |