Assay Details
Target Gene Details
Entrez Gene ID: | 1797 |
Gene Name: | decapping exoribonuclease |
Gene Aliases: |
DOM3L, DOM3Z, NG6, RAI1 |
Location: |
Chr.6:31969811-31972290 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 4 - Exon 5 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
DXO | NM_005510.3 | NP_005501.2 | ||
XM_006715005.3 | XP_006715068.1 | |||
XM_017010329.1 | XP_016865818.1 | |||
AF059252.1 | AAC78603.1 | |||
AK310107.1 | ||||
BC009344.2 | AAH09344.1 | |||
BC019083.2 | AAH19083.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv10463n54 | Chr.6:31817661 - 32683279 on Build GRCh38 | Loss | CFB LOC100507547 GPSM3 C4B HLA-DRA PPT2 ATF6B MIR6721 FKBPL MIR1236 SNORD52 STK19 MIR6833 HCG23 C2 RNF5 NELFE SKIV2L NEU1 TNXA EHMT2 NOTCH4 ZBTB12 HLA-DRB5 HLA-DRB1 DXO C4A AGER AGPAT1 C2-AS1 SNORD48 HSPA1B HLA-DQB1-AS1 HLA-DQA1 SLC44A4 EGFL8 PPT2-EGFL8 PBX2 PRRT1 HSPA1A CYP21A1P TNXB CYP21A2 BTNL2 C6orf10 HLA-DRB6 LOC101929163 C6orf48 HLA-DQB1 |
esv2759415 | Chr.6:31903735 - 32241336 on Build GRCh38 | Gain+Loss | TNXA CFB LOC100507547 GPSM3 C4B PPT2 ATF6B NOTCH4 MIR6721 FKBPL MIR1236 STK19 DXO C4A AGER AGPAT1 C2-AS1 MIR6833 C2 EGFL8 PPT2-EGFL8 PBX2 PRRT1 CYP21A1P TNXB RNF5 NELFE CYP21A2 SKIV2L |
nsv1126749 | Chr.6:31457323 - 32594423 on Build GRCh38 | Deletion | DDX39B-AS1 LOC100287329 CSNK2B LTA CFB LOC100507547 GPSM3 C4B MICB HLA-DRA PPT2 LY6G5C ATF6B MIR4646 LY6G6C ATP6V1G2 MIR6721 C6orf25 FKBPL MIR1236 LY6G6E NCR3 SNORD52 GPANK1 HCG26 VARS DDX39B STK19 MIR6833 HCG23 C2 LST1 MIR6832 LY6G6F C6orf47 HCP5 RNF5 NELFE SKIV2L NEU1 MSH5 TNXA EHMT2 PRRC2A SNORA38 LSM2 MCCD1 ABHD16A NOTCH4 ZBTB12 HLA-DRB5 HLA-DRB1 TNF DXO C4A AGER ATP6V1G2-DDX39B SNORD117 LY6G6D AGPAT1 C2-AS1 SNORD48 NFKBIL1 CLIC1 HSPA1B LOC102725068 SAPCD1 AIF1 MSH5-SAPCD1 VWA7 SLC44A4 HSPA1L EGFL8 PPT2-EGFL8 PBX2 LTB PRRT1 HSPA1A LY6G5B CYP21A1P DDAH2 TNXB SAPCD1-AS1 CYP21A2 BTNL2 BAG6 C6orf10 HLA-DRB6 LOC101929163 C6orf48 SNORD84 APOM |
nsv1073969 | Chr.6:31456422 - 33480523 on Build GRCh38 | Deletion | CSNK2B MIR219A1 CFB LOC100507547 GPSM3 C4B PPP1R2P1 MICB PPT2 ZBTB22 MIR4646 LY6G6C C6orf25 LY6G6E GPANK1 HCG26 VARS STK19 KIFC1 HLA-DQA2 MIR6833 C2 PFDN6 RING1 SLC39A7 RXRB NELFE HLA-DMB HLA-DMA EHMT2 PRRC2A SNORA38 LOC100294145 MCCD1 WDR46 ABHD16A VPS52 DAXX PHF1 TNF LY6G6D AGPAT1 C2-AS1 NFKBIL1 LOC102725068 TAPBP AIF1 MSH5-SAPCD1 VWA7 SLC44A4 EGFL8 PRRT1 HSPA1A CYP21A1P HLA-DPA1 BAG6 HCG25 SNORD84 DDX39B-AS1 LOC100287329 LTA MIR5004 HLA-DOB MIR3135B HCG24 HLA-DRA LY6G5C ATF6B MIR6873 ATP6V1G2 MIR6721 FKBPL MIR1236 NCR3 SNORD52 DDX39B HLA-DPB1 HCG23 MIR6834 LST1 MIR6832 LY6G6F COL11A2 BRD2 C6orf47 HCP5 RNF5 PSMB8-AS1 CUTA SKIV2L NEU1 MSH5 RGL2 TNXA ZBTB9 RPS18 PSMB9 LSM2 TAP2 HLA-DPB2 SYNGAP1 NOTCH4 ZBTB12 TAP1 HLA-DRB5 HLA-DRB1 B3GALT4 HSD17B8 HLA-DOA DXO C4A AGER ATP6V1G2-DDX39B HLA-DQB2 SNORD117 PSMB8 SNORD48 CLIC1 HSPA1B SAPCD1 HLA-DQB1-AS1 HLA-DQA1 HSPA1L PPT2-EGFL8 PBX2 LTB LY6G5B DDAH2 TNXB SAPCD1-AS1 CYP21A2 BTNL2 C6orf10 HLA-DRB6 LOC101929163 C6orf48 APOM HLA-DQB1 |
dgv10403n54 | Chr.6:31312324 - 32049763 on Build GRCh38 | Loss | DDX39B-AS1 LOC100287329 CSNK2B LTA CFB C4B MICB LY6G5C MIR4646 LY6G6C ATP6V1G2 C6orf25 MIR1236 LY6G6E NCR3 SNORD52 GPANK1 HCG26 VARS DDX39B STK19 MICA C2 LST1 MIR6832 LY6G6F C6orf47 HCP5 NELFE SKIV2L NEU1 MSH5 MIR6891 TNXA EHMT2 PRRC2A SNORA38 LSM2 MCCD1 ABHD16A ZBTB12 TNF DXO C4A HLA-B ATP6V1G2-DDX39B SNORD117 LY6G6D C2-AS1 SNORD48 NFKBIL1 CLIC1 HSPA1B LOC102725068 SAPCD1 AIF1 MSH5-SAPCD1 VWA7 SLC44A4 HSPA1L LTB HSPA1A LY6G5B CYP21A1P DDAH2 TNXB SAPCD1-AS1 CYP21A2 BAG6 C6orf48 SNORD84 APOM |
nsv830628 | Chr.6:31919777 - 31979823 on Build GRCh38 | Loss | CFB C2-AS1 C2 MIR1236 NELFE SKIV2L STK19 DXO |
nsv1112900 | Chr.6:31455323 - 33480423 on Build GRCh38 | Deletion | CSNK2B MIR219A1 CFB LOC100507547 GPSM3 C4B PPP1R2P1 MICB PPT2 ZBTB22 MIR4646 LY6G6C C6orf25 LY6G6E GPANK1 HCG26 VARS STK19 KIFC1 HLA-DQA2 MIR6833 C2 PFDN6 RING1 SLC39A7 RXRB NELFE HLA-DMB HLA-DMA EHMT2 PRRC2A SNORA38 LOC100294145 MCCD1 WDR46 ABHD16A VPS52 DAXX PHF1 TNF LY6G6D AGPAT1 C2-AS1 NFKBIL1 LOC102725068 TAPBP AIF1 MSH5-SAPCD1 VWA7 SLC44A4 EGFL8 PRRT1 HSPA1A CYP21A1P HLA-DPA1 BAG6 HCG25 SNORD84 DDX39B-AS1 LOC100287329 LTA MIR5004 HLA-DOB MIR3135B HCG24 HLA-DRA LY6G5C ATF6B MIR6873 ATP6V1G2 MIR6721 FKBPL MIR1236 NCR3 SNORD52 DDX39B HLA-DPB1 HCG23 MIR6834 LST1 MIR6832 LY6G6F COL11A2 BRD2 C6orf47 HCP5 RNF5 PSMB8-AS1 CUTA SKIV2L NEU1 MSH5 RGL2 TNXA ZBTB9 RPS18 PSMB9 LSM2 TAP2 HLA-DPB2 SYNGAP1 NOTCH4 ZBTB12 TAP1 HLA-DRB5 HLA-DRB1 B3GALT4 HSD17B8 HLA-DOA DXO C4A AGER ATP6V1G2-DDX39B HLA-DQB2 SNORD117 PSMB8 SNORD48 CLIC1 HSPA1B SAPCD1 HLA-DQB1-AS1 HLA-DQA1 HSPA1L PPT2-EGFL8 PBX2 LTB LY6G5B DDAH2 TNXB SAPCD1-AS1 CYP21A2 BTNL2 C6orf10 HLA-DRB6 LOC101929163 C6orf48 APOM HLA-DQB1 |
dgv10404n54 | Chr.6:31312550 - 32516591 on Build GRCh38 | Loss | DDX39B-AS1 LOC100287329 CSNK2B LTA CFB LOC100507547 GPSM3 C4B MICB HLA-DRA PPT2 LY6G5C ATF6B MIR4646 LY6G6C ATP6V1G2 MIR6721 C6orf25 FKBPL MIR1236 LY6G6E NCR3 SNORD52 GPANK1 HCG26 VARS DDX39B STK19 MIR6833 MICA HCG23 C2 LST1 MIR6832 LY6G6F C6orf47 HCP5 RNF5 NELFE SKIV2L NEU1 MSH5 MIR6891 TNXA EHMT2 PRRC2A SNORA38 LSM2 MCCD1 ABHD16A NOTCH4 ZBTB12 TNF DXO C4A HLA-B AGER ATP6V1G2-DDX39B SNORD117 LY6G6D AGPAT1 C2-AS1 SNORD48 NFKBIL1 CLIC1 HSPA1B LOC102725068 SAPCD1 AIF1 MSH5-SAPCD1 VWA7 SLC44A4 HSPA1L EGFL8 PPT2-EGFL8 PBX2 LTB PRRT1 HSPA1A LY6G5B CYP21A1P DDAH2 TNXB SAPCD1-AS1 CYP21A2 BTNL2 BAG6 C6orf10 LOC101929163 C6orf48 SNORD84 APOM |
nsv5247 | Chr.6:31957962 - 32055439 on Build GRCh38 | Deletion | TNXA CYP21A1P TNXB NELFE CYP21A2 C4B SKIV2L STK19 DXO C4A |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |