Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 8 - Exon 9 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
XM_017026666.1 | XP_016882155.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
BG189223.1 | ||||
BQ446114.1 | ||||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | PRPF31 OSCAR TFPT TARM1 VSTM1 NDUFA3 |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | CACNG6 TARM1 CACNG8 MIR935 VSTM1 |
nsv1057516 | Chr.19:53986233 - 54046901 on Build GRCh38 | Gain | CACNG6 CACNG8 VSTM1 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | CACNG6 CACNG8 MIR935 VSTM1 CACNG7 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | MIR512-2 OSCAR ZNF331 MIR525 MIR520E TMC4 MIR518D MIR521-1 MIR512-1 MIR935 LILRA6 MIR1283-1 CNOT3 TPM3P9 MYADM MIR519C NLRP12 MIR517A MIR516B2 MIR520H MIR526B VSTM1 MIR518E MIR526A2 MIR517B PRPF31 MIR518C TFPT MIR523 MIR519B MIR522 MIR518A2 MIR519D MIR524 LILRB3 ZNF818P MIR498 ZNF677 FAM90A27P MIR371A VN1R2 LILRB2 MIR1283-2 MIR517C MIR520G CACNG6 MIR526A1 ZNF813 LILRA5 LENG1 MIR373 MIR372 MIR516B1 MIR520A LOC105372457 DPRX MBOAT7 MIR1323 CACNG8 MIR516A2 MIR520D MIR516A1 MIR519E MIR4752 VN1R4 MIR521-2 ZNF761 LILRB5 ZNF765 TSEN34 MIR371B ZNF525 MIR518B LOC284379 RPS9 NDUFA3 MIR520B BIRC8 MIR527 MIR519A1 MIR515-2 MIR519A2 MIR520F MIR515-1 TARM1 MIR518F MIR518A1 ZNF665 ZNF845 CACNG7 MIR520C PRKCG |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | PRPF31 OSCAR CACNG6 TFPT TARM1 CACNG8 MIR935 VSTM1 NDUFA3 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |