Assay Details
Target Gene Details
Entrez Gene ID: | 10044 |
Gene Name: | SH2 domain containing 3C |
Gene Aliases: |
CHAT, NSP3, PRO34088, SHEP1 |
Location: |
Chr.9:127738317-127778769 on Build GRCh38 |
Assay Gene Location: | Within Exon 18 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SH2D3C | NM_001142531.1 | 11 | 2422 | NP_001136003.1 |
NM_001142532.1 | 11 | 2671 | NP_001136004.1 | |
NM_001142533.1 | 10 | 2559 | NP_001136005.1 | |
NM_001142534.1 | 10 | 2531 | NP_001136006.1 | |
NM_001252334.1 | 12 | 2928 | NP_001239263.1 | |
NM_005489.3 | 11 | 2557 | NP_005480.2 | |
NM_170600.2 | 12 | 3030 | NP_733745.1 | |
XM_005251639.1 | 11 | 2538 | XP_005251696.1 | |
XM_011518114.1 | 12 | 3014 | XP_011516416.1 | |
XM_011518115.1 | 12 | 2974 | XP_011516417.1 | |
XM_011518117.2 | 10 | 3650 | XP_011516419.1 | |
XM_017014174.1 | 10 | 2811 | XP_016869663.1 | |
AI472242.1 | 1 | 136 | ||
AI799905.1 | 1 | 136 | ||
AJ420431.1 | 5 | 1099 | ||
AK056068.1 | 10 | 2559 | ||
AK096983.1 | 8 | 1852 | ||
AK128287.1 | 13 | 2961 | ||
AK291393.1 | ||||
AK292041.1 | 11 | 2485 | ||
AK292718.1 | 12 | 2901 | ||
AK294386.1 | 11 | 2422 | ||
AY358089.1 | 11 | 2539 | AAQ88456.1 | |
BC027962.1 | 11 | 2428 | AAH27962.1 | |
BC032365.1 | 12 | 2905 | AAH32365.1 | |
BX647905.1 | 12 | 2854 | CAI46101.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv12879n54 | Chr.9:127731234 - 127824409 on Build GRCh38 | Loss | TOR2A FPGS MIR2861 SH2D3C LOC102723566 TTC16 CDK9 MIR3960 ENG |
nsv615371 | Chr.9:127735841 - 127787855 on Build GRCh38 | Loss | MIR2861 SH2D3C CDK9 MIR3960 |
nsv471323 | Chr.9:127727464 - 127845239 on Build GRCh38 | Loss | TOR2A FPGS MIR2861 SH2D3C LOC102723566 TTC16 CDK9 MIR3960 ENG |
nsv466571 | Chr.9:127707924 - 127774438 on Build GRCh38 | Loss | TOR2A SH2D3C TTC16 PTRH1 CFAP157 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |