Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 10 - Intron 11 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | NP_001275721.1 | |||
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | NP_940883.2 | |||
NR_110142.1 | ||||
XM_011526845.1 | XP_011525147.1 | |||
XM_011526846.1 | XP_011525148.1 | |||
XM_011526847.1 | XP_011525149.1 | |||
XM_011526848.1 | XP_011525150.1 | |||
XM_011526849.1 | XP_011525151.1 | |||
XM_017026666.1 | XP_016882155.1 | |||
AY358542.1 | AAQ88906.1 | |||
BC100943.2 | AAI00944.1 | |||
BG189223.1 | ||||
BQ446114.1 | ||||
DQ479397.1 | ||||
FJ584316.1 | ||||
FJ584317.1 | ||||
FJ584318.1 | ||||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | ||||
FN398145.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | OSCAR VSTM1 TFPT PRPF31 NDUFA3 TARM1 |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | VSTM1 MIR935 CACNG6 CACNG8 TARM1 |
nsv1057516 | Chr.19:53986233 - 54046901 on Build GRCh38 | Gain | VSTM1 CACNG6 CACNG8 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | VSTM1 MIR935 CACNG6 CACNG8 CACNG7 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | OSCAR FAM90A27P PRPF31 MIR372 ZNF665 CNOT3 MIR519C TARM1 MIR518C MIR516A1 MIR521-1 MIR520G MIR519B BIRC8 LILRA6 TFPT ZNF761 ZNF818P MIR498 LILRB3 CACNG7 MIR527 LILRA5 TPM3P9 MIR373 MIR1283-1 ZNF525 RPS9 VN1R4 MIR512-2 ZNF677 LENG1 MIR525 MIR517B MIR521-2 PRKCG ZNF813 MIR516A2 MIR515-1 MIR526A2 LILRB2 MIR371A VN1R2 MIR935 MIR519A2 MIR520D TMC4 LILRB5 MIR520B LOC105372457 MIR520F MIR518E MIR518F MIR518A2 MIR526B MIR517C MIR516B1 ZNF765 MIR520A MIR520E MYADM MIR515-2 MIR520H MIR524 MIR512-1 MIR1283-2 MIR519E DPRX VSTM1 MIR526A1 TSEN34 NDUFA3 CACNG6 LOC284379 MIR1323 NLRP12 ZNF331 MIR518D MIR519A1 MIR516B2 MIR523 ZNF845 MIR522 MIR4752 MIR518A1 MBOAT7 MIR517A CACNG8 MIR519D MIR520C MIR518B MIR371B |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | OSCAR VSTM1 TFPT PRPF31 MIR935 NDUFA3 CACNG6 CACNG8 TARM1 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |