Assay Details
Target Gene Details
Entrez Gene ID: | 284415 |
Gene Name: | V-set and transmembrane domain containing 1 |
Gene Aliases: |
SIRL-1, SIRL1, UNQ3033 |
Location: |
Chr.19:54040825-54063966 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
VSTM1 | NM_001288791.1 | NP_001275720.1 | ||
NM_001288792.1 | 3 | 478 | NP_001275721.1 | |
NM_001288793.1 | NP_001275722.1 | |||
NM_198481.3 | 3 | 478 | NP_940883.2 | |
NR_110142.1 | 3 | 478 | ||
XM_011526845.1 | 3 | 491 | XP_011525147.1 | |
XM_011526846.1 | 3 | 491 | XP_011525148.1 | |
XM_011526847.1 | 3 | 491 | XP_011525149.1 | |
XM_011526848.1 | 3 | 491 | XP_011525150.1 | |
XM_011526849.1 | 3 | 491 | XP_011525151.1 | |
XM_017026666.1 | 3 | 491 | XP_016882155.1 | |
AY358542.1 | 3 | 487 | AAQ88906.1 | |
BC100943.2 | 3 | 455 | AAI00944.1 | |
BQ446114.1 | 7 | 555 | ||
DQ479397.1 | 3 | 319 | ||
FJ584316.1 | 3 | 313 | ||
FJ584317.1 | 3 | 313 | ||
FJ584318.1 | 3 | 313 | ||
FJ584319.1 | ||||
FJ584320.1 | ||||
FJ882051.1 | 3 | 313 | ||
FN398145.1 | 3 | 306 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv510773 | Chr.19:54017180 - 54132236 on Build GRCh38 | Deletion | NDUFA3 TARM1 TFPT OSCAR VSTM1 PRPF31 |
nsv580110 | Chr.19:53961144 - 54093354 on Build GRCh38 | Gain | TARM1 CACNG8 MIR935 CACNG6 VSTM1 |
nsv2542 | Chr.19:54050737 - 54097924 on Build GRCh38 | Deletion | TARM1 OSCAR VSTM1 |
nsv1063127 | Chr.19:53926876 - 54068977 on Build GRCh38 | Gain | CACNG8 MIR935 CACNG6 VSTM1 CACNG7 |
nsv9750 | Chr.19:54049927 - 54058628 on Build GRCh38 | Gain | VSTM1 |
esv3644780 | Chr.19:54057724 - 54066399 on Build GRCh38 | Gain | VSTM1 |
dgv663e199 | Chr.19:54051591 - 54059132 on Build GRCh38 | Deletion | VSTM1 |
esv2718812 | Chr.19:53184636 - 54322450 on Build GRCh38 | Deletion | TFPT MIR522 MIR371A MIR518F MIR519E ZNF765 MIR516B1 MIR525 ZNF845 MIR518A2 MIR498 ZNF677 MIR517A MIR524 MIR1283-2 MIR516A2 LILRA5 MIR518A1 TPM3P9 MIR516B2 MIR4752 PRPF31 MIR520E MIR517B TSEN34 MIR519C NLRP12 CACNG8 ZNF665 FAM90A27P MIR526A1 MIR520A LILRB2 CACNG7 MIR521-2 VN1R4 ZNF331 MYADM RPS9 MIR520F ZNF525 MIR519B MIR935 MIR526B MIR515-2 MIR373 ZNF813 MIR371B MIR518E MIR518B TARM1 LOC284379 MIR372 LILRB3 LOC105372457 MIR512-1 PRKCG MIR517C MIR523 MIR520C MIR515-1 MIR1323 BIRC8 VSTM1 MIR518C ZNF818P MIR521-1 LENG1 CNOT3 MIR519A1 MIR1283-1 LILRB5 MIR527 MIR519D MIR520H MIR520G TMC4 LILRA6 MBOAT7 CACNG6 MIR512-2 MIR519A2 NDUFA3 MIR516A1 ZNF761 DPRX MIR520B OSCAR MIR526A2 MIR518D MIR520D VN1R2 |
nsv580137 | Chr.19:54053501 - 54058538 on Build GRCh38 | Loss | VSTM1 |
nsv833877 | Chr.19:53951529 - 54117323 on Build GRCh38 | Loss | NDUFA3 TARM1 TFPT CACNG8 MIR935 OSCAR CACNG6 VSTM1 PRPF31 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |